Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C4Q28_RS19715 Genome accession   NZ_CP026676
Coordinates   4216581..4218818 (-) Length   745 a.a.
NCBI ID   WP_104882035.1    Uniprot ID   -
Organism   Pseudomonas sp. SWI6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4211581..4223818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4Q28_RS19680 (C4Q28_19680) murB 4211916..4212935 (-) 1020 WP_104882032.1 UDP-N-acetylmuramate dehydrogenase -
  C4Q28_RS19685 (C4Q28_19685) - 4212932..4213396 (-) 465 WP_104882033.1 low molecular weight protein-tyrosine-phosphatase -
  C4Q28_RS19690 (C4Q28_19690) kdsB 4213396..4214160 (-) 765 WP_027907743.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4Q28_RS19695 (C4Q28_19695) - 4214157..4214342 (-) 186 WP_003247142.1 Trm112 family protein -
  C4Q28_RS19700 (C4Q28_19700) lpxK 4214387..4215388 (-) 1002 WP_104882034.1 tetraacyldisaccharide 4'-kinase -
  C4Q28_RS19705 (C4Q28_19705) - 4215388..4215822 (-) 435 WP_023379395.1 biopolymer transporter ExbD -
  C4Q28_RS19710 (C4Q28_19710) exbB 4215819..4216454 (-) 636 WP_023379394.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4Q28_RS19715 (C4Q28_19715) comA 4216581..4218818 (-) 2238 WP_104882035.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4Q28_RS19720 (C4Q28_19720) - 4218961..4219467 (+) 507 Protein_3875 DUF2062 domain-containing protein -
  C4Q28_RS19725 (C4Q28_19725) - 4219477..4220256 (-) 780 WP_023379390.1 ABC transporter permease -
  C4Q28_RS19730 (C4Q28_19730) - 4220253..4221185 (-) 933 WP_023379389.1 ABC transporter ATP-binding protein -
  C4Q28_RS19735 (C4Q28_19735) - 4221318..4221941 (-) 624 WP_023379388.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 80528.55 Da        Isoelectric Point: 10.4487

>NTDB_id=271629 C4Q28_RS19715 WP_104882035.1 4216581..4218818(-) (comA) [Pseudomonas sp. SWI6]
MRKGMLALAIGLLCLGFLPALPSVGWLLLLLCCGLGCLCVRWWPVACFLLGVCWACWSAQQALDDRLAPQLDGRTLWLEG
RVVGLPTRTAQGVRFELSQPLSRRAELPTRLQLSWFDGPPLRAGEHWRLAVTLQRPTGLLNPHGPDREASLLARRIGATG
TVKAGEKLSSVAGSWRDQLRQRLLAVQAQGREAALVALVVGDGAALARDDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPHRQPWLPWACGLAMAAALGYGGLAGWGVPVQRACLMLAVVLAWRLRFRHIGSGIPLLLALIAVLLFEPL
AALLPGFWLSFAAVAVLIYCFSARLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLFAVPLISLTVLPLAL
LGTLLLPLGSVGEGLLWLAGGLLELLFWLLGKVAGWRSAWMPAALPLWAWLLVAGGALLVLLPRGVPLRGLGGVMLLALW
VPPEQVPQGQVEVWQLDVGQGLAVLLRTRTHSLLYDAGPARGDSDLGEWVVLPTLRKLGVSRLDMMLISHAHADHAGGAQ
AVARGLPIGRLLAGEAQALSGAQPCVSDERWEWDGVRFSLWRWPEAQGSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AASEQPDIDWLQSPHHGSRTSSTEAFIKATKPRGVLISRGRNNGFGHPHPQVIERYRRHGVVIHDTAVEGALRLRLGHRG
GVEGLRAQRRFWRAAAPSPSSQVPR

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=271629 C4Q28_RS19715 WP_104882035.1 4216581..4218818(-) (comA) [Pseudomonas sp. SWI6]
ATGCGCAAAGGGATGCTTGCGCTCGCCATTGGGCTGTTGTGCCTGGGGTTTCTGCCGGCCTTGCCGTCGGTCGGCTGGCT
ATTGCTGTTGCTGTGCTGTGGCTTGGGCTGCCTGTGTGTTCGGTGGTGGCCGGTCGCCTGTTTTCTGCTGGGCGTGTGCT
GGGCCTGCTGGTCGGCCCAGCAGGCCCTGGATGATCGGTTGGCGCCGCAGCTCGATGGCCGTACGTTATGGCTGGAGGGC
AGGGTGGTCGGGTTGCCGACTCGCACCGCGCAAGGCGTGCGTTTTGAGTTGTCGCAGCCACTCTCGCGCCGAGCCGAGTT
ACCGACCCGTCTGCAACTGAGCTGGTTCGACGGTCCGCCGCTGCGCGCGGGCGAACACTGGCGTCTGGCCGTGACCTTGC
AGCGTCCGACAGGCTTGCTCAACCCCCATGGCCCGGACCGCGAGGCAAGCCTGTTGGCCCGACGGATCGGCGCAACCGGC
ACGGTCAAGGCCGGCGAGAAGCTGTCGTCCGTAGCGGGCAGTTGGCGCGACCAACTGCGTCAGCGGCTGCTCGCGGTCCA
GGCACAGGGCCGTGAAGCCGCGCTGGTTGCCTTGGTGGTGGGCGATGGAGCGGCATTGGCCCGGGACGATTGGCAAACCT
TGCAGGCCACGGGCACGGTGCACTTGCTGGTCATCTCCGGGCAACACATCGGTCTGGTGGCCGGCCTGCTGTACGGGTTG
GTCGCCGGGCTGGCGCGCTGGGGGCTCTGGCCTCATCGCCAGCCTTGGCTGCCGTGGGCCTGTGGCCTGGCCATGGCGGC
GGCGCTGGGGTATGGCGGGCTGGCGGGGTGGGGCGTGCCGGTGCAGCGAGCCTGTTTGATGTTGGCCGTGGTACTGGCCT
GGCGCCTGCGCTTCCGCCACATCGGTTCCGGGATACCCTTGCTGTTGGCGCTCATCGCGGTGCTGTTGTTCGAGCCATTG
GCTGCGTTGTTGCCCGGGTTCTGGTTGTCTTTCGCCGCGGTGGCCGTACTCATTTACTGCTTCAGCGCACGTCTGGGTGG
CTGGCGACCCTGGCAAGCCTGGACCCGTGCGCAGTGGGTAATCGCCATTGGCCTGCTGCCAGTGTTGCTCGCCACAGGGC
TGCCGGTCAGCCTGAGTGCGCCCCTGGCCAACCTCTTTGCAGTGCCCTTGATCAGCCTGACGGTGTTGCCGCTGGCGTTG
CTCGGCACGCTGCTGCTGCCATTGGGCAGTGTGGGCGAGGGCTTGCTGTGGCTGGCGGGTGGCTTGTTGGAGCTGCTCTT
CTGGCTTTTGGGCAAGGTGGCGGGTTGGCGTTCTGCCTGGATGCCCGCTGCATTGCCCCTGTGGGCATGGCTGTTGGTGG
CGGGCGGGGCACTGCTGGTGTTGTTGCCCAGAGGCGTGCCACTGCGTGGCTTGGGTGGGGTGATGCTGCTGGCCTTGTGG
GTACCGCCAGAGCAGGTGCCGCAGGGGCAGGTGGAGGTCTGGCAATTGGATGTCGGCCAAGGGTTGGCGGTACTGCTGCG
AACCCGAACCCACAGCCTTCTGTACGATGCAGGGCCGGCACGCGGTGACAGCGACCTAGGTGAATGGGTGGTGCTGCCGA
CCCTGCGCAAACTGGGGGTGAGCCGCCTGGACATGATGCTGATCAGCCATGCCCATGCCGACCACGCCGGTGGCGCGCAG
GCTGTGGCGCGCGGGTTGCCCATCGGGCGCCTGCTGGCGGGAGAGGCACAGGCGCTGTCTGGAGCGCAGCCCTGCGTCAG
CGATGAGCGCTGGGAATGGGATGGCGTGCGCTTTTCGCTGTGGCGATGGCCCGAGGCGCAAGGCAGCAATGACCGCTCTT
GCGTGCTGCTGGTCGAGGCGCAAGGCGAGCGGCTGCTGCTGGCGGGCGACATGGAGGCGGGTGCCGAGCGTGCCTGGCTG
GCCGCCAGCGAGCAGCCCGACATCGACTGGTTGCAATCGCCCCATCACGGTAGCCGCACGTCGTCCACCGAGGCTTTCAT
CAAGGCCACCAAGCCGCGTGGCGTGTTGATTTCGCGAGGGCGCAACAATGGGTTTGGCCATCCGCACCCGCAGGTGATCG
AACGCTACCGGCGCCATGGCGTGGTGATTCATGATACGGCGGTGGAGGGGGCATTGCGCTTGCGCCTGGGGCATCGCGGT
GGGGTAGAGGGCCTGCGTGCGCAGCGGCGTTTCTGGCGTGCGGCAGCCCCCTCGCCATCCAGCCAGGTACCGCGCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-676)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.192

96.376

0.57
  comA Ralstonia pseudosolanacearum GMI1000

35.859

100

0.381

Multiple sequence alignment