Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4Q28_RS19710 Genome accession   NZ_CP026676
Coordinates   4215819..4216454 (-) Length   211 a.a.
NCBI ID   WP_023379394.1    Uniprot ID   A0A2G8MZK3
Organism   Pseudomonas sp. SWI6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4210819..4221454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4Q28_RS19680 (C4Q28_19680) murB 4211916..4212935 (-) 1020 WP_104882032.1 UDP-N-acetylmuramate dehydrogenase -
  C4Q28_RS19685 (C4Q28_19685) - 4212932..4213396 (-) 465 WP_104882033.1 low molecular weight protein-tyrosine-phosphatase -
  C4Q28_RS19690 (C4Q28_19690) kdsB 4213396..4214160 (-) 765 WP_027907743.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4Q28_RS19695 (C4Q28_19695) - 4214157..4214342 (-) 186 WP_003247142.1 Trm112 family protein -
  C4Q28_RS19700 (C4Q28_19700) lpxK 4214387..4215388 (-) 1002 WP_104882034.1 tetraacyldisaccharide 4'-kinase -
  C4Q28_RS19705 (C4Q28_19705) - 4215388..4215822 (-) 435 WP_023379395.1 biopolymer transporter ExbD -
  C4Q28_RS19710 (C4Q28_19710) exbB 4215819..4216454 (-) 636 WP_023379394.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4Q28_RS19715 (C4Q28_19715) comA 4216581..4218818 (-) 2238 WP_104882035.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4Q28_RS19720 (C4Q28_19720) - 4218961..4219467 (+) 507 Protein_3875 DUF2062 domain-containing protein -
  C4Q28_RS19725 (C4Q28_19725) - 4219477..4220256 (-) 780 WP_023379390.1 ABC transporter permease -
  C4Q28_RS19730 (C4Q28_19730) - 4220253..4221185 (-) 933 WP_023379389.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22827.11 Da        Isoelectric Point: 7.3616

>NTDB_id=271628 C4Q28_RS19710 WP_023379394.1 4215819..4216454(-) (exbB) [Pseudomonas sp. SWI6]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWIWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=271628 C4Q28_RS19710 WP_023379394.1 4215819..4216454(-) (exbB) [Pseudomonas sp. SWI6]
GTGTGGGAATTGGTCAAGTCCGGCGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCCGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGTGTCACTCCGCCGCACCTGTTGGGCCAGGTGTGGATCTGGATCAAGGACA
AACAGCTTACCAGTGACAAGCTCAAGGCCTTGCGCGCCGACTCGCCGCTGGGTGAAATCCTCGCCGCAGGCCTGGCCAAC
TCCCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATCCACGAACTGGAGCGCTACAT
CAGCACCTTGGGCACCATCGCCGCCATGGCTCCGCTGCTCGGCCTGCTGGGCACCGTGTTGGGCATGATCGACATCTTCA
GTGCCTTCATGGGCTCGCAGATGACCGCCAATGCTGCCGTGTTGGCCGGGGGGATCTCCAAGGCCCTGGTCACCACCGCT
GCGGGCCTGATGGTCGGTATTCCGGCAGTGTTCTTCCATCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGAAGTGGAAGTGGCTGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G8MZK3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829

Multiple sequence alignment