Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C4Q27_RS19520 Genome accession   NZ_CP026675
Coordinates   4081585..4083798 (+) Length   737 a.a.
NCBI ID   WP_104887873.1    Uniprot ID   -
Organism   Pseudomonas sp. SWI36     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4076585..4088798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4Q27_RS19500 (C4Q27_19500) - 4078461..4079084 (+) 624 WP_104887224.1 glutathione S-transferase -
  C4Q27_RS19505 (C4Q27_19505) - 4079218..4080150 (+) 933 WP_010952922.1 ABC transporter ATP-binding protein -
  C4Q27_RS19510 (C4Q27_19510) - 4080147..4080926 (+) 780 WP_003247128.1 ABC transporter permease -
  C4Q27_RS19515 (C4Q27_19515) - 4080930..4081442 (-) 513 Protein_3657 DUF2062 domain-containing protein -
  C4Q27_RS19520 (C4Q27_19520) comA 4081585..4083798 (+) 2214 WP_104887873.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4Q27_RS19525 (C4Q27_19525) exbB 4083909..4084544 (+) 636 WP_026031862.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4Q27_RS19530 (C4Q27_19530) - 4084541..4084975 (+) 435 WP_104887225.1 biopolymer transporter ExbD -
  C4Q27_RS19535 (C4Q27_19535) lpxK 4084975..4085976 (+) 1002 WP_014859650.1 tetraacyldisaccharide 4'-kinase -
  C4Q27_RS19540 (C4Q27_19540) - 4086021..4086206 (+) 186 WP_003247142.1 Trm112 family protein -
  C4Q27_RS19545 (C4Q27_19545) kdsB 4086203..4086967 (+) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4Q27_RS19550 (C4Q27_19550) - 4086967..4087431 (+) 465 WP_064491353.1 low molecular weight protein-tyrosine-phosphatase -
  C4Q27_RS19555 (C4Q27_19555) murB 4087428..4088447 (+) 1020 WP_064491352.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79416.37 Da        Isoelectric Point: 10.4818

>NTDB_id=271607 C4Q27_RS19520 WP_104887873.1 4081585..4083798(+) (comA) [Pseudomonas sp. SWI36]
MRTGMFALALGLLCLGFLPALPSVGWLITLAACAVGSLFTRVWPLGWFLLGLCWACGSAQQALDDRLAAGLEGRTLWLEG
RVAGLPARTAHGVRFELEAPRSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPDGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVAGGWRDALRQRLLMVEANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLGAFFPLLLALVAVLVFEPL
AALLPGFWLSFAAVATLIYCFSARLGGWRPWQAWTRAQWVIAVGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLMLPLGGVGEALLWLAGGLLDVLFRGLALVAQQRPAWVPPALPLWAWLLVCLGVLLVLLPRGVPLRGLGGVMLLALW
VPREPVPFGQVEVWQLDVGQGLAVLLRTRHHSLLYDAGPARGESDLGERVVLPTLRKLGVGGLDVMVISHAHADHAGGAG
AIARGLPIKRIIGGEALVDVPLQPCASGEQWDWDGVRFSLWRWVDGQSSNDRSCVLLVEAQGERLLLAGDMEAAAERAWL
ADTEMPRIDWLQAPHHGSRSSSTEAFVRATAPRGVLISRGRNNSFGHPHVQVVERYGRHGVVMHDTAVEGALRLVLGRHG
VVEGVRGQRRFWRVRGE

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=271607 C4Q27_RS19520 WP_104887873.1 4081585..4083798(+) (comA) [Pseudomonas sp. SWI36]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTGCCCGCATTGCCATCGGTCGGATGGTT
GATAACCCTGGCAGCCTGCGCTGTCGGCAGCCTGTTTACCCGCGTCTGGCCGCTGGGTTGGTTTCTGCTGGGCTTGTGTT
GGGCGTGCGGGTCTGCTCAGCAGGCCCTTGATGATCGTCTGGCTGCCGGCCTGGAGGGGCGCACCTTGTGGCTGGAGGGG
CGGGTGGCGGGTTTGCCGGCCCGTACTGCACACGGTGTGCGTTTCGAGCTGGAAGCGCCACGCTCGCGGCGGGCCGAACT
GCCTCAGCGCCTGCAACTGAGCTGGTTCGACGGCCCGCCGCTGCGGGCGGGCGAGCAGTGGCGGCTGGCCGTGACCTTGC
AGCGCCCGGACGGGCTGCTGAACCCGCATGGGCCCGACCGTGAAGCGCAGTTGCTGGCGCGACGGGTGGGCGCTACGGGT
ACGGTCAAGGCGGGGCAGTTGCTGGCGCCAGTCGCCGGTGGTTGGCGCGATGCACTGCGTCAGCGCTTGCTGATGGTCGA
AGCCAATGGCCGACAGGCAGCGCTGGTGGCCTTGGTGCTTGGCGATGGTGCGGGCCTGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATTTCCGGCCAGCACATCGGCCTGGTCGCCGGTTTGCTCTATGGCCTG
GTCGCCGGGCTGGCGCGTTGGGGGCTATGGCCGGCAAGGCTACCGTGGTTGCCCTGGGCCTGCGGCCTGGCCATGGCCGC
AGCGCTGGCCTACGGGTGGCTGGCTGGCGGTGGGGTGCCAGTACAGCGGGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGTCTGCGCTTTCGCCACCTTGGCGCGTTTTTTCCGTTGCTGCTTGCACTGGTCGCCGTGCTTGTCTTCGAGCCACTG
GCGGCGTTGCTGCCTGGGTTCTGGCTGTCGTTCGCCGCCGTGGCCACGCTCATCTACTGCTTCAGTGCCCGGTTGGGTGG
TTGGCGGCCCTGGCAGGCCTGGACACGAGCGCAATGGGTGATCGCTGTCGGCTTGCTGCCGGTGTTGCTGGCCACCGGCT
TGCCGGTGAGCCTCAGTGCGCCGCTGGCCAACCTTGTGGCGGTGCCGTGGGTCAGCCTGGCGGTCTTGCCGTTGGCGTTG
CTGGGCACGCTGATGTTGCCGCTGGGGGGTGTTGGCGAGGCGTTGCTCTGGCTGGCAGGTGGCCTGCTGGATGTGCTGTT
CCGTGGGCTGGCGCTGGTGGCGCAGCAGCGCCCGGCATGGGTCCCGCCGGCCCTGCCGTTGTGGGCCTGGCTGCTGGTAT
GTCTGGGTGTGCTGTTGGTTTTGCTGCCCCGTGGTGTGCCGCTGCGCGGGTTGGGAGGGGTGATGCTGCTGGCGCTGTGG
GTGCCCCGGGAGCCGGTGCCGTTCGGCCAGGTCGAGGTCTGGCAGCTGGATGTTGGCCAGGGGCTGGCGGTGCTATTGCG
TACGCGGCATCACAGCCTGCTCTACGATGCCGGGCCGGCCAGGGGGGAAAGCGACCTGGGGGAACGCGTGGTGCTGCCAA
CCTTGCGCAAGTTGGGGGTGGGCGGCCTTGACGTGATGGTGATCAGCCATGCGCACGCCGATCATGCGGGCGGGGCCGGA
GCCATTGCGCGTGGTTTGCCGATCAAGCGGATAATCGGTGGGGAAGCGCTGGTTGATGTTCCGTTGCAGCCTTGTGCCAG
TGGTGAGCAATGGGATTGGGATGGCGTGCGCTTTTCGCTGTGGCGCTGGGTGGACGGGCAGAGCAGTAATGACCGTTCCT
GTGTCTTGTTGGTGGAAGCGCAGGGCGAGCGCTTGCTGCTGGCGGGGGATATGGAAGCTGCTGCCGAAAGGGCCTGGCTG
GCGGACACTGAAATGCCGCGTATCGACTGGCTGCAGGCGCCGCATCATGGCAGCCGCAGCTCGTCCACCGAGGCGTTCGT
CCGGGCTACCGCACCGCGCGGGGTATTGATTTCGCGGGGGCGCAACAACAGCTTCGGGCACCCGCACGTGCAGGTGGTCG
AACGGTATGGGCGGCATGGGGTGGTGATGCATGATACGGCGGTGGAGGGGGCATTGCGGTTGGTGCTGGGGCGGCATGGG
GTAGTCGAGGGGGTTAGGGGGCAGCGGCGGTTCTGGCGGGTTCGAGGGGAGTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(12-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.587

97.965

0.574
  comA Ralstonia pseudosolanacearum GMI1000

34.694

100

0.369

Multiple sequence alignment