Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4Q27_RS19525 Genome accession   NZ_CP026675
Coordinates   4083909..4084544 (+) Length   211 a.a.
NCBI ID   WP_026031862.1    Uniprot ID   A0AA34WU07
Organism   Pseudomonas sp. SWI36     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4078909..4089544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4Q27_RS19505 (C4Q27_19505) - 4079218..4080150 (+) 933 WP_010952922.1 ABC transporter ATP-binding protein -
  C4Q27_RS19510 (C4Q27_19510) - 4080147..4080926 (+) 780 WP_003247128.1 ABC transporter permease -
  C4Q27_RS19515 (C4Q27_19515) - 4080930..4081442 (-) 513 Protein_3657 DUF2062 domain-containing protein -
  C4Q27_RS19520 (C4Q27_19520) comA 4081585..4083798 (+) 2214 WP_104887873.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4Q27_RS19525 (C4Q27_19525) exbB 4083909..4084544 (+) 636 WP_026031862.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4Q27_RS19530 (C4Q27_19530) - 4084541..4084975 (+) 435 WP_104887225.1 biopolymer transporter ExbD -
  C4Q27_RS19535 (C4Q27_19535) lpxK 4084975..4085976 (+) 1002 WP_014859650.1 tetraacyldisaccharide 4'-kinase -
  C4Q27_RS19540 (C4Q27_19540) - 4086021..4086206 (+) 186 WP_003247142.1 Trm112 family protein -
  C4Q27_RS19545 (C4Q27_19545) kdsB 4086203..4086967 (+) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4Q27_RS19550 (C4Q27_19550) - 4086967..4087431 (+) 465 WP_064491353.1 low molecular weight protein-tyrosine-phosphatase -
  C4Q27_RS19555 (C4Q27_19555) murB 4087428..4088447 (+) 1020 WP_064491352.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22889.20 Da        Isoelectric Point: 7.3616

>NTDB_id=271608 C4Q27_RS19525 WP_026031862.1 4083909..4084544(+) (exbB) [Pseudomonas sp. SWI36]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLASGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVIGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=271608 C4Q27_RS19525 WP_026031862.1 4083909..4084544(+) (exbB) [Pseudomonas sp. SWI36]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAACGCCTGTGGACCTTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTATGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCCGATTCGCCACTGGGTGAAATCCTCGCGGCGGGCCTGGCCAAT
TCGCGTCACGGTCGGGAGATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCATGAACTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCGCCTCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTGCTGGCCAGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCTGGCCTGATGGTCGGTATCCCGGCAGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAACTGGTGATCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGTGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82

Multiple sequence alignment