Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   D0819_RS10595 Genome accession   NZ_CP031784
Coordinates   2019193..2020197 (-) Length   334 a.a.
NCBI ID   WP_017695488.1    Uniprot ID   -
Organism   Bacillus subtilis strain HMNig-2     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 2014193..2025197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS10570 (D0819_10610) acuA 2015120..2015752 (+) 633 WP_003229296.1 acetoin utilization protein acetyltransferase AcuA -
  D0819_RS10575 (D0819_10615) acuB 2015779..2016423 (+) 645 WP_003229294.1 acetoin utilization AcuB family protein -
  D0819_RS10580 (D0819_10620) acuC 2016420..2017583 (+) 1164 WP_015714526.1 acetoin utilization protein AcuC -
  D0819_RS10585 (D0819_10625) motS 2017594..2018322 (-) 729 WP_153256973.1 flagellar motor protein MotS -
  D0819_RS10590 (D0819_10630) motP 2018312..2019130 (-) 819 WP_014477672.1 flagellar motor protein MotP -
  D0819_RS10595 (D0819_10635) ccpA 2019193..2020197 (-) 1005 WP_017695488.1 catabolite control protein A Regulator
  D0819_RS10600 (D0819_10640) aroX 2020473..2021549 (-) 1077 WP_003223454.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  D0819_RS10605 (D0819_10645) ytxJ 2021786..2022112 (-) 327 WP_038429472.1 bacillithiol system redox-active protein YtxJ -
  D0819_RS10610 (D0819_10650) ytxH 2022136..2022591 (-) 456 WP_004398549.1 YtxH domain-containing protein -
  D0819_RS10615 (D0819_10655) ytxG 2022622..2023044 (-) 423 WP_003229276.1 DUF948 domain-containing protein -
  D0819_RS10620 (D0819_10660) murC 2023206..2024504 (-) 1299 WP_153256974.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 36970.36 Da        Isoelectric Point: 5.0249

>NTDB_id=271291 D0819_RS10595 WP_017695488.1 2019193..2020197(-) (ccpA) [Bacillus subtilis strain HMNig-2]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMTEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=271291 D0819_RS10595 WP_017695488.1 2019193..2020197(-) (ccpA) [Bacillus subtilis strain HMNig-2]
ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGGAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGGCTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCA
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCCCCAGTGCCGATCGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCGTTCGTTTCCGGACC
AATGACAGAGCCGATCAACCGTTCGAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTCGGCATTATCCATGCTGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGCTTTGATAATACAAGATTAAGCCTCATGGTTCGTCCGCAGCTTTCAACAGTTGTTCAGC
CGACATATGATATTGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATAGAGCTAAGAAAGTCAACCAAGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539

  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503