Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   C3Y93_RS08270 Genome accession   NZ_CP026616
Coordinates   1718917..1721055 (-) Length   712 a.a.
NCBI ID   WP_171287418.1    Uniprot ID   -
Organism   Acinetobacter sp. SWBY1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1713917..1726055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3Y93_RS08255 (C3Y93_08255) - 1716383..1717228 (-) 846 WP_104852646.1 hypothetical protein -
  C3Y93_RS08260 (C3Y93_08260) aroB 1717239..1718318 (-) 1080 WP_104852647.1 3-dehydroquinate synthase -
  C3Y93_RS14445 (C3Y93_08265) aroK 1718349..1718879 (-) 531 WP_104852648.1 shikimate kinase AroK -
  C3Y93_RS08270 (C3Y93_08270) pilQ 1718917..1721055 (-) 2139 WP_171287418.1 type IV pilus secretin PilQ family protein Machinery gene
  C3Y93_RS08275 (C3Y93_08275) pilP 1721116..1721640 (-) 525 WP_104852650.1 pilus assembly protein PilP Machinery gene
  C3Y93_RS08280 (C3Y93_08280) comO 1721640..1722350 (-) 711 WP_104852651.1 type 4a pilus biogenesis protein PilO Machinery gene
  C3Y93_RS08285 (C3Y93_08285) comN 1722347..1722982 (-) 636 WP_104852652.1 PilN domain-containing protein Machinery gene
  C3Y93_RS08290 (C3Y93_08290) pilM 1722982..1724040 (-) 1059 WP_104852653.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 76796.04 Da        Isoelectric Point: 5.6734

>NTDB_id=270906 C3Y93_RS08270 WP_171287418.1 1718917..1721055(-) (pilQ) [Acinetobacter sp. SWBY1]
MNNLFRQFSMGAVAMAVMQVANAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPAAYQLEQPARLILDFDKAQQTLKQNSI
AVATKEASSVEVSSDAQRSRLTVNLADAGAFTTRVEGNTFILKINSTTATPVAAVTAQRSAQGISNIGFQRGGEGEGQVV
IDLLGSNTPVDVQQQGSKIVVRTLGNKVPAHLARRLNVNDFATPVSTIDAHNDGSNGVITIQAAGSYEYMAYQAEDKLTI
SLKRPVDKNPFKPRAAQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVSELIKAEEEEAKAIAQSVKLAPLQTEYIQLNYAKAADIEKLITEGKNASRSGSSNTGSGADPLGDS
VGSLLSPRGTVSVDPRTNTLIINDTSAKIDQIRQMIDLLDVSVKQVMIEARIVRATTDFTKEMGVKWGILSQGITNNNHL
LVGGSDTTLWNLREPEKDDDMGGWKYEIERPQNLNVDLGVTSPGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPK
VLTADKQNAKVASGTQIPYQSSKGGGANAVSTTQFIDATLSLDVTPSITPDGKVQMQLNITSDSPGAPTPTGQLTINKNA
VNTNVLVDNGETVVLGGIFEQQTANSQTKVPFLGDIPYIGRLFRKDVKSENKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=270906 C3Y93_RS08270 WP_171287418.1 1718917..1721055(-) (pilQ) [Acinetobacter sp. SWBY1]
ATGAACAATTTGTTCCGTCAGTTTTCAATGGGCGCAGTCGCAATGGCGGTGATGCAAGTGGCTAATGCCCAAGTGAGCAT
TACCAATATTGTACCAATGCAAATTCCAGGACAAGGCACGGAAATTCGTGTCATGTTCAATGGCTTACCACCACAGCCAG
CGGCATATCAGTTGGAACAACCTGCGCGTTTGATTCTAGACTTTGATAAAGCACAACAAACGTTGAAACAAAACAGTATT
GCAGTGGCGACCAAAGAAGCCAGTTCTGTAGAGGTCAGCTCAGATGCTCAGCGTTCACGTTTAACTGTGAACTTGGCTGA
TGCAGGTGCATTTACCACACGTGTTGAAGGTAATACCTTTATTTTAAAGATCAACTCAACTACAGCCACACCTGTTGCAG
CAGTGACTGCACAACGTAGCGCACAAGGAATTTCCAATATTGGTTTCCAACGTGGTGGTGAAGGTGAAGGTCAGGTGGTG
ATTGACCTGTTGGGTAGCAACACACCTGTAGATGTACAGCAACAAGGCAGCAAAATTGTCGTACGTACTTTGGGCAATAA
AGTCCCTGCGCATTTGGCTCGTCGCCTGAATGTGAATGACTTTGCAACCCCAGTATCAACCATTGATGCGCATAATGATG
GTAGCAATGGCGTGATCACCATTCAGGCTGCAGGTAGCTATGAATATATGGCCTATCAGGCAGAAGACAAGCTCACCATC
AGCTTAAAACGCCCAGTTGATAAAAACCCGTTTAAGCCACGTGCAGCACAAAGCTACACAGGTAAAAAGATTTCATTGGA
CTTCCAAGATATCGAAGTGCGTCGTGTATTACAGCTGTTGGCAGACTTTACAGGCATCAATATGGTGGCTGCAGATACAG
TACAAGGTAATATCACCTTACGTTTAAAAGATGTGCCTTGGGATCAAGCCTTAGACATTATTCTGAAAACCAAAAATTTA
GACAAGCGCCGTAATGGTAATGTGATCTGGATTGCGCCAGTTTCTGAGTTGATTAAGGCGGAAGAAGAAGAAGCCAAAGC
GATTGCACAAAGTGTTAAATTGGCACCACTGCAAACTGAATATATTCAGTTGAACTATGCTAAAGCCGCAGATATTGAGA
AGCTTATTACTGAAGGTAAAAATGCATCACGTAGTGGTAGTTCAAATACAGGTTCTGGAGCTGACCCATTAGGTGATAGC
GTGGGGAGCTTGCTCAGCCCTCGCGGTACAGTGTCTGTAGATCCACGTACCAATACCTTAATTATTAATGATACTTCAGC
AAAAATTGATCAGATTCGTCAGATGATAGATTTGCTTGATGTGTCTGTGAAGCAAGTGATGATTGAAGCACGTATCGTAC
GTGCAACCACAGATTTCACCAAAGAGATGGGTGTGAAGTGGGGCATCTTGTCTCAAGGGATCACTAACAATAATCACTTG
TTGGTGGGTGGTAGTGATACCACTCTGTGGAACTTGCGTGAGCCAGAAAAAGATGATGATATGGGGGGGTGGAAGTATGA
AATTGAACGTCCACAAAACCTGAATGTCGATTTAGGAGTGACCAGTCCAGGTGCCAGCCGTATTGCCTTTGGTTTAATCA
GTTTGTCTGACTTTATGCTAGATTTGGAATTGTCTGCATTACAAGCCGATGGCTATGGTGAAGTGATTTCAACACCAAAA
GTACTGACTGCAGATAAGCAAAATGCCAAAGTTGCATCGGGTACTCAAATTCCATACCAATCTTCTAAAGGTGGGGGCGC
TAATGCTGTCTCGACCACACAATTTATTGATGCGACTTTAAGTTTGGATGTGACCCCAAGTATCACGCCTGATGGTAAAG
TCCAAATGCAATTGAATATCACCAGTGACTCACCAGGTGCGCCTACACCAACCGGTCAGCTCACGATTAACAAGAACGCC
GTGAATACCAACGTTTTGGTGGACAATGGTGAAACTGTAGTCTTGGGGGGTATTTTTGAGCAACAAACGGCTAACTCTCA
AACCAAGGTTCCATTCTTGGGCGATATTCCTTATATCGGACGTTTATTCCGTAAAGATGTTAAGTCGGAAAACAAACGTG
AGTTGCTGATTTTTGTTACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(40-120)

Bacterial type II and III secretion system protein (Secretin)

(546-704)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

76.657

100

0.779
  pilQ Acinetobacter baumannii strain A118

76.519

100

0.778
  comQ Acinetobacter baylyi ADP1

74.266

100

0.746
  pilQ Pseudomonas aeruginosa PAK

40.426

99.017

0.4
  pilQ Legionella pneumophila strain ERS1305867

37.819

99.157

0.375
  pilQ Legionella pneumophila strain Lp02

37.819

99.157

0.375

Multiple sequence alignment