Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   C3Y93_RS00635 Genome accession   NZ_CP026616
Coordinates   128790..129494 (-) Length   234 a.a.
NCBI ID   WP_004971566.1    Uniprot ID   A0AAP4HCD2
Organism   Acinetobacter sp. SWBY1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 123790..134494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3Y93_RS00615 (C3Y93_00615) - 124560..125879 (+) 1320 WP_004971574.1 adenylosuccinate synthase -
  C3Y93_RS00620 (C3Y93_00620) - 126118..126426 (+) 309 WP_004971573.1 hypothetical protein -
  C3Y93_RS00625 (C3Y93_00625) - 126583..127365 (+) 783 WP_004971571.1 M48 family metallopeptidase -
  C3Y93_RS00630 (C3Y93_00630) - 127534..128583 (-) 1050 WP_104851789.1 NADP(H)-dependent aldo-keto reductase -
  C3Y93_RS00635 (C3Y93_00635) crp 128790..129494 (-) 705 WP_004971566.1 cAMP-activated global transcriptional regulator CRP Regulator
  C3Y93_RS00640 (C3Y93_00640) - 129643..130065 (+) 423 WP_070156041.1 OsmC family protein -
  C3Y93_RS00645 (C3Y93_00645) clpB 130377..132956 (+) 2580 WP_104851790.1 ATP-dependent chaperone ClpB -
  C3Y93_RS00650 (C3Y93_00650) - 133185..134468 (+) 1284 WP_104851791.1 DUF945 family protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26333.90 Da        Isoelectric Point: 4.7168

>NTDB_id=270890 C3Y93_RS00635 WP_004971566.1 128790..129494(-) (crp) [Acinetobacter sp. SWBY1]
MTSNFSQLSTDALSPGQLPDSVKALLKRAYINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDDREIVVAYLNPGDF
FGEMGLFESNPQRTAEVRTRDVCEIAEITYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEQNESTDGNFDDE

Nucleotide


Download         Length: 705 bp        

>NTDB_id=270890 C3Y93_RS00635 WP_004971566.1 128790..129494(-) (crp) [Acinetobacter sp. SWBY1]
ATGACTTCCAACTTTTCACAGCTGAGTACTGATGCATTGTCCCCAGGACAACTGCCTGACTCAGTCAAAGCATTATTAAA
ACGTGCATACATCAACCGTTATCCAAAACGGACAACTATTGTTGATGCAGGGACTGAATCAAAATCATTATATTTGATTC
TAAAAGGTTCAGTATCAATTATTCTTCGCGAAGATGATGATCGCGAAATTGTTGTGGCATATTTGAATCCAGGCGACTTT
TTTGGGGAAATGGGTCTGTTTGAATCGAATCCGCAACGTACTGCAGAGGTTCGTACTCGTGATGTCTGTGAAATCGCAGA
AATTACTTATGAAAATTTCCACGAACTCAGCAAACAATATCCCGATTTAAGCTATGCCGTTTTTGCACAGCTGGTACGTC
GTTTAAAAAATACTACACGTAAAGTGACTGACCTTGCCTTTATAGATGTGTCTGGTCGTATTGCACGTTGCTTGATTGAT
CTTTCTGCGCAGCCAGAAGCCATGATTTTGCCAAACGGTCGTCAAATTCGTATTACACGCCAAGAAATTGGTCGTATTGT
CGGCTGTTCACGTGAAATGGTCGGGCGTGTTCTAAAAACACTTGAAGAGCAAGGCATGATTGAAACTGATGGTAAAGCCA
TTCTTATTTTTGATGCTTCATTGGAGCAAAATGAATCCACTGATGGCAACTTTGATGACGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.88

100

0.919
  crp Vibrio cholerae strain A1552

47.317

87.607

0.415
  crp Haemophilus influenzae Rd KW20

47.692

83.333

0.397

Multiple sequence alignment