NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	D1F63_RS09395	Genome accession	NZ_CP031770
Coordinates	1825477..1826073 (-)	Length	198 a.a.
NCBI ID	WP_002992186.1	Uniprot ID	P0DF49
Organism	Streptococcus pyogenes strain SASM4-Duke
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1820477..1831073

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D1F63_RS09360 (D1F63_09360)	-	1820537..1820842 (-)	306	WP_002982199.1	DUF1292 domain-containing protein	-
D1F63_RS09365 (D1F63_09365)	ruvX	1820854..1821273 (-)	420	WP_002982196.1	Holliday junction resolvase RuvX	-
D1F63_RS09370 (D1F63_09370)	-	1821270..1821539 (-)	270	WP_002982194.1	IreB family regulatory phosphoprotein	-
D1F63_RS09375 (D1F63_09375)	spx	1821653..1822051 (-)	399	WP_002982188.1	transcriptional regulator Spx	-
D1F63_RS09380 (D1F63_09380)	recA	1822342..1823478 (-)	1137	WP_002992179.1	recombinase RecA	Machinery gene
D1F63_RS09385 (D1F63_09385)	cinA	1823567..1824838 (-)	1272	WP_002992182.1	competence/damage-inducible protein A	Machinery gene
D1F63_RS09390 (D1F63_09390)	-	1824907..1825467 (-)	561	WP_002992183.1	DNA-3-methyladenine glycosylase I	-
D1F63_RS09395 (D1F63_09395)	ruvA	1825477..1826073 (-)	597	WP_002992186.1	Holliday junction branch migration protein RuvA	Machinery gene
D1F63_RS09400 (D1F63_09400)	-	1826075..1827295 (-)	1221	WP_011529098.1	MFS transporter	-
D1F63_RS09405 (D1F63_09405)	hexB	1827306..1829288 (-)	1983	WP_021299132.1	DNA mismatch repair endonuclease MutL	Machinery gene
D1F63_RS09410 (D1F63_09410)	-	1829383..1830534 (-)	1152	WP_003058754.1	site-specific integrase	-
D1F63_RS09415 (D1F63_09415)	-	1830783..1830926 (+)	144	WP_011185066.1	putative holin-like toxin	-

Sequence

Protein

Download Length: 198 a.a. Molecular weight: 21879.26 Da Isoelectric Point: 6.8838

                                >NTDB_id=270872 D1F63_RS09395 WP_002992186.1 1825477..1826073(-) (ruvA) [Streptococcus pyogenes strain SASM4-Duke]

MYDYIKGQLTKITAKYIVVEANGLGYMINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI

GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGHTKARSNKAGNTQLDEAIEAL

LALGYKAKELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide

Download Length: 597 bp

                                >NTDB_id=270872 D1F63_RS09395 WP_002992186.1 1825477..1826073(-) (ruvA) [Streptococcus pyogenes strain SASM4-Duke]

ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAGCTAATGGATTGGGCTACAT

GATTAATGTTGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAATTGGTAACCATTTATCTGCATCAAGTGATTCGTG

AGGATGCTCACCTGTTGTTTGGTTTTCACACGGAAGATGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGTATT

GGTCCGACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA

GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG

CTCCACAAGAGACTGGTCATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC

CTTGCCCTCGGTTATAAAGCAAAAGAGCTGAAAAAAATTCGTGCCTTCTTTGAGGGGACCTCTGAGACGGCAGAGCAATA

CATCAAATCAGCATTGAAACTGTTAATGAAAGGGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-196)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	P0DF49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Streptococcus pneumoniae TIGR4	65.99	99.495	0.657
ruvA	Streptococcus pneumoniae R6	65.99	99.495	0.657
ruvA	Streptococcus pneumoniae D39	65.99	99.495	0.657
ruvA	Bacillus subtilis subsp. subtilis str. 168	40.887	100	0.419

Detailed information NTG0270872