Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   D0T88_RS21130 Genome accession   NZ_CP031706
Coordinates   4361028..4361660 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain R1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4356028..4366660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0T88_RS21105 (D0T88_22675) yheS 4356197..4358110 (+) 1914 WP_000634798.1 ABC transporter ATP-binding protein -
  D0T88_RS21110 (D0T88_22680) yheT 4358110..4359132 (+) 1023 WP_000057405.1 hydrolase -
  D0T88_RS21115 (D0T88_22685) yheU 4359126..4359344 (+) 219 WP_000907085.1 YheU family protein -
  D0T88_RS21120 (D0T88_22690) prkB 4359398..4360267 (+) 870 WP_001274680.1 phosphoribulokinase -
  D0T88_RS21125 (D0T88_22695) yhfA 4360322..4360726 (-) 405 WP_001148904.1 OsmC family protein -
  D0T88_RS21130 (D0T88_22710) crp 4361028..4361660 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  D0T88_RS21135 (D0T88_22715) yhfK 4361711..4363801 (+) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  D0T88_RS21140 (D0T88_22720) argD 4363868..4365088 (-) 1221 WP_000963797.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  D0T88_RS21145 (D0T88_22725) pabA 4365174..4365737 (-) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  D0T88_RS21150 (D0T88_22730) fic 4365769..4366371 (-) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  D0T88_RS21155 (D0T88_22735) yhfG 4366361..4366528 (-) 168 WP_000736860.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=270672 D0T88_RS21130 WP_000242755.1 4361028..4361660(+) (crp) [Escherichia coli strain R1]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=270672 D0T88_RS21130 WP_000242755.1 4361028..4361660(+) (crp) [Escherichia coli strain R1]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467