Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PDEN_RS02975 Genome accession   NC_008686
Coordinates   572452..573522 (+) Length   356 a.a.
NCBI ID   WP_011746942.1    Uniprot ID   A1AZL5
Organism   Paracoccus denitrificans PD1222     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 567452..578522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDEN_RS02955 (Pden_0593) - 567470..568273 (+) 804 WP_011746938.1 hypothetical protein -
  PDEN_RS02960 (Pden_0594) - 568349..569500 (+) 1152 WP_011746939.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  PDEN_RS02965 (Pden_0595) - 569558..571600 (+) 2043 WP_011746940.1 ATP-binding protein -
  PDEN_RS02970 (Pden_0596) - 571624..572208 (-) 585 WP_011746941.1 hypothetical protein -
  PDEN_RS02975 (Pden_0597) recA 572452..573522 (+) 1071 WP_011746942.1 recombinase RecA Machinery gene
  PDEN_RS02980 (Pden_0598) alaS 573749..576406 (+) 2658 WP_011746943.1 alanine--tRNA ligase -
  PDEN_RS02985 (Pden_0599) - 576403..576693 (+) 291 WP_011746944.1 DUF1330 domain-containing protein -
  PDEN_RS02990 (Pden_0600) - 576760..577554 (+) 795 WP_011746945.1 class II glutamine amidotransferase -
  PDEN_RS02995 (Pden_0602) - 577960..578181 (-) 222 WP_011746947.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38177.49 Da        Isoelectric Point: 4.9647

>NTDB_id=27042 PDEN_RS02975 WP_011746942.1 572452..573522(+) (recA) [Paracoccus denitrificans PD1222]
MAGATLFDMNDKRSADKQKALDSALAQIERQFGKGSIMKLGADNPVAEIEATSTGSLGLDIALGIGGLPKGRIIEIFGPE
SSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTGEQALEIVDTLVRSGAVSLVVVDSVAA
LTPKSEIEGDMGDMQMGSQARLMSQAMRKLTASIGRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRA
GSIKDRDEVTGNATRVKVVKNKVAPPFRQVEFDIMYGEGISKVGELIDLGIKAGVVEKSGSWYSYGDERIGQGRENAKQF
LRDHPDMAHAIEDKIRASHGLDFGVADDGDEVMAED

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=27042 PDEN_RS02975 WP_011746942.1 572452..573522(+) (recA) [Paracoccus denitrificans PD1222]
ATGGCAGGGGCAACACTTTTCGACATGAACGACAAGCGATCCGCAGACAAGCAGAAGGCGCTAGACAGCGCATTGGCCCA
GATCGAACGGCAGTTCGGCAAAGGCTCGATCATGAAGCTGGGCGCCGACAATCCGGTGGCCGAGATCGAGGCCACCTCGA
CCGGCTCGCTGGGGCTCGACATCGCGCTGGGGATCGGCGGTCTGCCCAAGGGCCGGATCATCGAGATATTCGGGCCGGAA
AGCTCGGGCAAGACCACGCTGACGCTGCATGTCGTGGCGGAAGAGCAGAAGAAAGGCGGCGTTTGCGCCTTTGTCGATGC
CGAACATGCGCTGGACCCGCAATATGCCAAGAAGCTGGGCGTCAATCTGGACGAGTTGCTGATCAGCCAGCCCGATACGG
GCGAGCAGGCGCTTGAGATTGTCGATACGCTGGTGCGTTCCGGTGCGGTCAGCCTGGTGGTGGTCGATTCGGTCGCGGCG
CTGACCCCCAAGTCCGAGATCGAAGGTGACATGGGCGACATGCAGATGGGCAGCCAGGCCCGGCTGATGAGCCAGGCGAT
GCGCAAGCTGACCGCCAGCATCGGCCGGTCGAACTGTATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGAAGCCCAGAGACGACGACCGGCGGCAATGCCCTGAAGTTTTATGCCTCGGTGCGCCTGGATATCCGCCGCGCC
GGCTCGATCAAGGACCGTGACGAGGTGACCGGCAACGCCACTCGCGTCAAGGTGGTCAAGAACAAGGTCGCGCCACCTTT
CCGTCAGGTCGAGTTCGACATCATGTATGGCGAGGGCATCTCGAAGGTCGGCGAACTGATCGACTTGGGCATCAAGGCCG
GCGTGGTCGAAAAATCGGGGTCGTGGTACTCCTATGGCGACGAGCGCATCGGCCAGGGCCGTGAGAATGCCAAGCAATTC
CTGCGCGATCATCCCGATATGGCCCATGCGATCGAGGACAAGATCCGCGCCAGCCACGGCCTGGATTTCGGCGTCGCGGA
CGATGGCGATGAGGTGATGGCCGAGGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1AZL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

72.866

92.135

0.671
  recA Neisseria gonorrhoeae MS11

68.263

93.82

0.64
  recA Neisseria gonorrhoeae MS11

68.263

93.82

0.64
  recA Neisseria gonorrhoeae strain FA1090

68.263

93.82

0.64
  recA Glaesserella parasuis strain SC1401

70.312

89.888

0.632
  recA Vibrio cholerae strain A1552

69.782

90.169

0.629
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.782

90.169

0.629
  recA Pseudomonas stutzeri DSM 10701

69.565

90.449

0.629
  recA Bacillus subtilis subsp. subtilis str. 168

67.378

92.135

0.621
  recA Acinetobacter baylyi ADP1

68.536

90.169

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.516

95.787

0.618
  recA Acinetobacter baumannii D1279779

68.224

90.169

0.615
  recA Helicobacter pylori strain NCTC11637

63.93

95.787

0.612
  recA Helicobacter pylori 26695

63.93

95.787

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.337

91.573

0.598
  recA Streptococcus pneumoniae R6

59.155

99.719

0.59
  recA Streptococcus pneumoniae Rx1

59.155

99.719

0.59
  recA Streptococcus pneumoniae D39

59.155

99.719

0.59
  recA Streptococcus pneumoniae TIGR4

59.155

99.719

0.59
  recA Streptococcus mitis NCTC 12261

58.974

98.596

0.581
  recA Streptococcus mitis SK321

60

95.506

0.573
  recA Lactococcus lactis subsp. cremoris KW2

59.172

94.944

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

61.043

91.573

0.559
  recA Streptococcus pyogenes NZ131

59.05

94.663

0.559
  recA Streptococcus mutans UA159

59.697

92.697

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.259

91.011

0.539

Multiple sequence alignment