Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CH556_RS00210 Genome accession   NZ_CP031692
Coordinates   42995..43660 (+) Length   221 a.a.
NCBI ID   WP_071163122.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P595-8370     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 37995..48660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH556_RS00185 (CH556_00185) crp 39534..40208 (-) 675 WP_005647998.1 cAMP-activated global transcriptional regulator CRP Regulator
  CH556_RS00190 (CH556_00190) - 40193..40444 (-) 252 WP_005647999.1 YheU family protein -
  CH556_RS00195 (CH556_00195) slmA 40466..41122 (-) 657 WP_005648000.1 nucleoid occlusion factor SlmA -
  CH556_RS00200 (CH556_00200) dut 41126..41581 (-) 456 WP_116945035.1 dUTP diphosphatase -
  CH556_RS00205 (CH556_00205) coaBC 41629..42831 (-) 1203 WP_116945034.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CH556_RS00210 (CH556_00210) radC 42995..43660 (+) 666 WP_071163122.1 DNA repair protein RadC Machinery gene
  CH556_RS00215 (CH556_00215) rpmB 43874..44110 (+) 237 WP_005542826.1 50S ribosomal protein L28 -
  CH556_RS00220 (CH556_00220) rpmG 44122..44292 (+) 171 WP_005613503.1 50S ribosomal protein L33 -
  CH556_RS00225 (CH556_00225) - 44638..46002 (+) 1365 WP_032824513.1 diaminobutyrate--2-oxoglutarate transaminase -
  CH556_RS00230 (CH556_00230) vapB2 46149..46382 (+) 234 WP_005648011.1 type II toxin-antitoxin system antitoxin VapB2 -
  CH556_RS00235 (CH556_00235) vapC 46382..46780 (+) 399 WP_005651560.1 tRNA(fMet)-specific endonuclease VapC -
  CH556_RS00240 (CH556_00240) ddc 46800..48335 (+) 1536 WP_116945033.1 L-2,4-diaminobutyrate decarboxylase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24996.26 Da        Isoelectric Point: 6.5991

>NTDB_id=270401 CH556_RS00210 WP_071163122.1 42995..43660(+) (radC) [Haemophilus influenzae strain P595-8370]
MENNDELMPREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGSLHALLSADKKAFCSVKGLGITQFIQLQ
AITEMTKRYLKQDMLNTPIINDPETVKLFLLTELQHEEREVFMVLFLDNQHRLIKKERLFLGTINVSAVYPREIIKEALY
CNAAALILAHNHPSGITEPSYSDQLITKKIQDAAELMEIRVLDHLIVGKSDCYSFAENCLL

Nucleotide


Download         Length: 666 bp        

>NTDB_id=270401 CH556_RS00210 WP_071163122.1 42995..43660(+) (radC) [Haemophilus influenzae strain P595-8370]
ATGGAAAACAATGATGAATTAATGCCACGAGAAAAATTGCTGGCATTCGGAGCAAAAGCATTAAGTGATTATGAACTACT
TGCGATTTTTTTACGTACTGGTATCAAAGGTTGTCCTGTTATGTCACTTTCTAAAAATGTATTAACGCATTTTGGCTCCT
TGCACGCTTTACTTTCCGCAGATAAAAAAGCTTTCTGTTCTGTAAAAGGCTTAGGTATTACGCAATTTATTCAACTGCAA
GCGATTACGGAAATGACCAAGCGTTATTTAAAGCAAGATATGTTAAATACGCCGATTATTAATGATCCTGAAACGGTAAA
ACTTTTTTTACTCACTGAATTGCAACACGAGGAAAGAGAAGTATTTATGGTTTTATTTTTAGATAATCAACATCGTTTGA
TTAAAAAAGAGCGGTTATTTTTAGGTACAATTAATGTATCAGCGGTTTATCCGCGAGAAATTATTAAAGAAGCACTCTAT
TGTAATGCGGCAGCTTTAATTTTGGCACATAATCATCCTTCAGGTATAACGGAGCCGAGTTATTCGGATCAGCTTATTAC
TAAAAAAATTCAAGATGCGGCTGAACTAATGGAAATTCGCGTGCTTGATCATTTAATTGTAGGGAAAAGCGATTGTTATT
CTTTCGCGGAGAATTGTTTATTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(100-218)

UPF0758 N-terminal (UPF0758_N)

(8-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

98.643

100

0.986
  radC Streptococcus pneumoniae TIGR4

37.674

97.285

0.367
  radC Streptococcus pneumoniae R6

37.209

97.285

0.362
  radC Streptococcus pneumoniae D39

37.209

97.285

0.362

Multiple sequence alignment