Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CH576_RS00200 Genome accession   NZ_CP031691
Coordinates   42522..43187 (+) Length   221 a.a.
NCBI ID   WP_105894713.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P615-8618     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 37522..48187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH576_RS00175 (CH576_00175) crp 39061..39735 (-) 675 WP_005647998.1 cAMP-activated global transcriptional regulator CRP Regulator
  CH576_RS00180 (CH576_00180) - 39720..39971 (-) 252 WP_005647999.1 YheU family protein -
  CH576_RS00185 (CH576_00185) slmA 39993..40649 (-) 657 WP_005648000.1 nucleoid occlusion factor SlmA -
  CH576_RS00190 (CH576_00190) dut 40653..41108 (-) 456 WP_005631431.1 dUTP diphosphatase -
  CH576_RS00195 (CH576_00195) coaBC 41156..42358 (-) 1203 WP_105894712.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CH576_RS00200 (CH576_00200) radC 42522..43187 (+) 666 WP_105894713.1 DNA repair protein RadC Machinery gene
  CH576_RS00205 (CH576_00205) rpmB 43401..43637 (+) 237 WP_005542826.1 50S ribosomal protein L28 -
  CH576_RS00210 (CH576_00210) rpmG 43649..43819 (+) 171 WP_005613503.1 50S ribosomal protein L33 -
  CH576_RS00215 (CH576_00215) - 44167..45531 (+) 1365 WP_074039351.1 diaminobutyrate--2-oxoglutarate transaminase -
  CH576_RS00220 (CH576_00220) vapB2 45678..45911 (+) 234 WP_005648011.1 type II toxin-antitoxin system antitoxin VapB2 -
  CH576_RS00225 (CH576_00225) vapC 45911..46309 (+) 399 WP_005651560.1 tRNA(fMet)-specific endonuclease VapC -
  CH576_RS00230 (CH576_00230) ddc 46329..47864 (+) 1536 WP_105894714.1 L-2,4-diaminobutyrate decarboxylase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24951.20 Da        Isoelectric Point: 6.5991

>NTDB_id=270337 CH576_RS00200 WP_105894713.1 42522..43187(+) (radC) [Haemophilus influenzae strain P615-8618]
MENNDELMPREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGSLHALLSADKKAFCSVKGLGITQFIQLQ
AITEMTKRYLKQDMLSTPIINDPETVKLFLLTELQHEEREVFIVLFLDNQHRLIKKERLFLGTINVSAVYPREIIKEALY
CNAAALILAHNHPSGITEPSYSDQLITKKIQDAAELMEIRVLDHLIVGKSDCYSFAENCLL

Nucleotide


Download         Length: 666 bp        

>NTDB_id=270337 CH576_RS00200 WP_105894713.1 42522..43187(+) (radC) [Haemophilus influenzae strain P615-8618]
ATGGAAAACAATGATGAATTAATGCCACGGGAAAAATTGCTGGCATTCGGAGCAAAAGCATTAAGTGATTATGAACTACT
TGCGATTTTTTTACGCACTGGTATCAAAGGTTGTCCTGTTATGTCACTTTCTAAAAATGTATTAACGCATTTTGGCTCCT
TGCACGCTTTACTTTCCGCAGATAAAAAAGCTTTCTGTTCTGTAAAAGGCTTAGGTATTACGCAATTTATTCAACTGCAA
GCGATTACGGAAATGACCAAGCGTTATTTAAAGCAAGATATGTTAAGTACGCCGATTATTAATGATCCTGAAACGGTAAA
ACTTTTTTTACTCACTGAATTGCAACACGAGGAAAGAGAAGTATTTATAGTTTTATTTTTAGATAATCAACATCGTTTGA
TTAAAAAAGAGCGGTTATTTTTAGGTACAATTAATGTATCAGCGGTTTATCCGCGAGAAATTATTAAAGAAGCACTCTAT
TGTAATGCGGCAGCTTTAATTTTGGCACATAATCATCCTTCAGGTATAACGGAGCCGAGTTATTCGGATCAGCTTATTAC
TAAAAAAATTCAAGATGCGGCTGAACTAATGGAAATTCGCGTGCTTGATCATTTAATTGTAGGGAAAAGCGATTGTTATT
CTTTCGCGGAGAATTGTTTATTATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(8-74)

RadC-like JAB domain (RadC)

(100-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

98.643

100

0.986
  radC Streptococcus pneumoniae TIGR4

37.674

97.285

0.367
  radC Streptococcus pneumoniae R6

37.209

97.285

0.362
  radC Streptococcus pneumoniae D39

37.209

97.285

0.362

Multiple sequence alignment