Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   BKC06_RS08215 Genome accession   NZ_CP026568
Coordinates   1711879..1714095 (+) Length   738 a.a.
NCBI ID   WP_054091478.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. syringae strain Pss9097     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1706879..1719095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKC06_RS08200 (BKC06_008200) - 1709217..1709841 (+) 625 Protein_1540 glutathione S-transferase -
  BKC06_RS08205 (BKC06_008205) - 1710025..1710957 (+) 933 WP_011267141.1 ABC transporter ATP-binding protein -
  BKC06_RS08210 (BKC06_008210) - 1710954..1711742 (+) 789 WP_054091477.1 ABC transporter permease -
  BKC06_RS08215 (BKC06_008215) comA 1711879..1714095 (+) 2217 WP_054091478.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BKC06_RS08220 (BKC06_008220) exbB 1714138..1714854 (+) 717 WP_011267143.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  BKC06_RS08225 (BKC06_008225) - 1714851..1715282 (+) 432 WP_003317468.1 ExbD/TolR family protein -
  BKC06_RS08230 (BKC06_008230) lpxK 1715282..1716277 (+) 996 WP_054091479.1 tetraacyldisaccharide 4'-kinase -
  BKC06_RS08235 (BKC06_008235) - 1716295..1716480 (+) 186 WP_002552679.1 Trm112 family protein -
  BKC06_RS08240 (BKC06_008240) kdsB 1716477..1717241 (+) 765 WP_024639315.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  BKC06_RS08245 (BKC06_008245) murB 1717276..1718295 (+) 1020 WP_024642747.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80256.42 Da        Isoelectric Point: 10.3501

>NTDB_id=270305 BKC06_RS08215 WP_054091478.1 1711879..1714095(+) (comA) [Pseudomonas syringae pv. syringae strain Pss9097]
MRTGMIALALGLLALRFLPALPPAWLLLLMPILALMLLPFRTYPLAFFLLGFTWACVSAQWALSDRLAQRLDGQTLWVQG
KVVGLPSVAEGVVRFELEDAWSRRARLPARIRVAWYGGQPVNSGERWRMAIKLKRPAGLVNPDAFDYEAWLLAQRIGATG
TVVDGQLLAPARAAWRDAIRQRLLTVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRFLPWLPSACALAFSAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNAVLIFEPL
VTLQPGFWLSFAAVGILILIFSGRLGAWSWWQSWTRAQWLIAVGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
LGTLLLPVPVVGEGLLWLAGGALQGLFVFLGAVAAALPAWLPSAVPVWAWWLSLLGALLLLLPKGVPLRPLGWPLLLLCV
FPPLESVPEGQVDVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHSDADHAGGA
AAVHQAFPVARVLGGELARLAPQLDARLCESGARWEWDGVVFSTWRWEQGPDGNPASCILSVDARGERLLLAADIDVHAE
RAAIDSGFDLRAHWLQSPHHGSRTSSSKAFLRAVAPVGVLISRGRNNAFGHPHPLVMARYRGLGIASYDSAELGAVRLQL
GTFGTPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=270305 BKC06_RS08215 WP_054091478.1 1711879..1714095(+) (comA) [Pseudomonas syringae pv. syringae strain Pss9097]
ATGCGCACAGGGATGATCGCGCTCGCGCTCGGGCTGCTTGCCCTGCGTTTTCTACCGGCCCTGCCGCCGGCCTGGCTTCT
GCTGCTGATGCCGATACTGGCGTTGATGTTGCTGCCGTTCCGTACCTATCCGCTGGCGTTCTTTCTGCTCGGTTTCACCT
GGGCCTGCGTTTCGGCGCAGTGGGCATTGAGTGACCGCTTGGCGCAGCGTCTCGATGGTCAGACGCTGTGGGTGCAGGGC
AAGGTGGTCGGTTTGCCGAGTGTCGCCGAAGGTGTGGTGCGCTTTGAACTGGAAGATGCCTGGTCACGACGTGCCAGGCT
GCCGGCGCGAATCCGCGTGGCGTGGTACGGCGGCCAGCCCGTAAACAGCGGCGAGCGCTGGCGCATGGCGATCAAACTCA
AGCGGCCGGCCGGGCTGGTCAATCCGGATGCTTTCGACTATGAAGCCTGGCTACTGGCGCAGCGCATCGGCGCGACCGGC
ACGGTGGTGGATGGTCAGCTATTGGCACCCGCGCGTGCCGCCTGGCGCGATGCCATTCGTCAGCGTCTGCTGACGGTCGA
TGCGCAGGGCCGGGAGGGCGGTCTGGCTGCGCTGGTGCTGGGCGATGGCTCAGGGCTGTCGAGCACCGACTGGCAGGTGT
TGCAGGATACTGGCACTGTGCATCTGCTGGTCATTTCCGGCCAGCACATCGGTTTGCTGGCCGGGGTGATCTACGCGCTG
GTCGCAGGCCTGGCGCGCTGGGGGCTGTGGCCACGCTTTTTGCCCTGGCTGCCGTCGGCGTGTGCACTGGCGTTCAGTGC
TGCACTGGGCTACGGACTGCTGGCCGGTTTCGAGGTGCCGGTCCGGCGAGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGCTTGCGTTTTCGTCACCTGGGCGTGGTCTGGCCTTTGTTGCTGTCCTTCAACGCGGTGCTGATCTTCGAGCCGCTG
GTGACGCTGCAGCCGGGTTTCTGGCTGTCCTTCGCGGCGGTCGGCATTCTGATCCTGATTTTCAGCGGGCGTCTTGGCGC
CTGGAGCTGGTGGCAAAGCTGGACACGGGCGCAATGGCTGATCGCCGTTGGCTTGTTGCCGATCCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGCCCGTTTGCCAACCTGCTTGCGGTGCCTTGGGTCAGCGTGATTGTCCTGCCGCCGGCATTG
CTCGGAACGCTGTTGCTGCCAGTCCCCGTGGTCGGGGAAGGTCTGCTCTGGCTGGCGGGCGGGGCGCTGCAGGGGCTGTT
CGTATTCCTCGGCGCGGTGGCCGCCGCATTGCCGGCCTGGCTGCCCAGTGCCGTGCCGGTCTGGGCATGGTGGTTGAGTC
TGCTCGGAGCCTTGCTCCTGTTGCTGCCCAAGGGCGTGCCCCTGCGTCCGCTGGGCTGGCCGTTGCTGTTGCTGTGCGTT
TTTCCGCCGCTCGAATCAGTGCCTGAAGGTCAGGTCGATGTGTTGCAACTGGATGTGGGGCAGGGCCTGGCGATTCTCCT
GCGCACCCGCAATCACACACTCCTGTATGACGCAGGTCCACGTTTCGGTGAGTTCGATATCGGTCAGCGCGTGGTCGTGC
CCGCCATGCGCAAGGCGGGTGTCCGCCATCTTGACCTGATGTTGATCAGCCATTCCGACGCAGACCATGCCGGAGGTGCA
GCAGCGGTTCATCAGGCCTTTCCGGTGGCCCGCGTGCTAGGCGGTGAGCTGGCCCGCCTCGCGCCGCAACTCGACGCCCG
ACTGTGCGAGAGCGGTGCACGCTGGGAGTGGGATGGCGTGGTGTTTTCCACGTGGCGCTGGGAGCAGGGGCCTGACGGCA
ATCCGGCCTCCTGCATCCTCAGCGTCGACGCCAGGGGCGAGCGTCTGCTGCTGGCGGCCGATATCGACGTGCACGCCGAG
CGTGCGGCGATCGACAGCGGGTTCGACCTTCGTGCCCACTGGTTGCAGTCGCCGCATCACGGCAGCCGTACCTCGTCGTC
CAAAGCATTTTTGCGCGCCGTGGCACCGGTTGGCGTGCTGATTTCCCGTGGTCGCAACAACGCGTTCGGTCACCCGCATC
CGTTGGTCATGGCGCGCTATCGAGGCCTGGGCATCGCCAGTTACGACAGTGCCGAGCTGGGCGCGGTCCGTCTGCAACTG
GGGACATTCGGAACGCCACAGGCCGAGCGCGCGCAACGGCGCTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.43

97.019

0.606
  comA Ralstonia pseudosolanacearum GMI1000

34.556

100

0.396

Multiple sequence alignment