Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   BKC06_RS08220 Genome accession   NZ_CP026568
Coordinates   1714138..1714854 (+) Length   238 a.a.
NCBI ID   WP_011267143.1    Uniprot ID   A0AAJ4E3K1
Organism   Pseudomonas syringae pv. syringae strain Pss9097     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1709138..1719854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKC06_RS08200 (BKC06_008200) - 1709217..1709841 (+) 625 Protein_1540 glutathione S-transferase -
  BKC06_RS08205 (BKC06_008205) - 1710025..1710957 (+) 933 WP_011267141.1 ABC transporter ATP-binding protein -
  BKC06_RS08210 (BKC06_008210) - 1710954..1711742 (+) 789 WP_054091477.1 ABC transporter permease -
  BKC06_RS08215 (BKC06_008215) comA 1711879..1714095 (+) 2217 WP_054091478.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BKC06_RS08220 (BKC06_008220) exbB 1714138..1714854 (+) 717 WP_011267143.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  BKC06_RS08225 (BKC06_008225) - 1714851..1715282 (+) 432 WP_003317468.1 ExbD/TolR family protein -
  BKC06_RS08230 (BKC06_008230) lpxK 1715282..1716277 (+) 996 WP_054091479.1 tetraacyldisaccharide 4'-kinase -
  BKC06_RS08235 (BKC06_008235) - 1716295..1716480 (+) 186 WP_002552679.1 Trm112 family protein -
  BKC06_RS08240 (BKC06_008240) kdsB 1716477..1717241 (+) 765 WP_024639315.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  BKC06_RS08245 (BKC06_008245) murB 1717276..1718295 (+) 1020 WP_024642747.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25834.33 Da        Isoelectric Point: 7.3261

>NTDB_id=270306 BKC06_RS08220 WP_011267143.1 1714138..1714854(+) (exbB) [Pseudomonas syringae pv. syringae strain Pss9097]
MVEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEQKLDSEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=270306 BKC06_RS08220 WP_011267143.1 1714138..1714854(+) (exbB) [Pseudomonas syringae pv. syringae strain Pss9097]
ATGGTAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCC
GATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCATCGAGCGCTTGTGGACGTTGCGTGCCAGCCGTATCACGCCAC
CGCACCTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAACAGAAGCTGGACAGCGAAAAGCTCAAGCAGCTGCGCGCTGAC
TCGCCGCTGGGCGAAATCCTTGCCGCAGGGCTGGCCAATTCCAGGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGA
AGCCGCTGCCCGGGTCATTCATGAACTGGAGCGCTACCTCAGCGCACTGGGCTCGATCGCTGCCATGGCGCCGTTGCTTG
GTTTGCTCGGCACGGTGCTGGGCATGATCGATATCTTCGGCTCGTTCAACAGCTCCGGGGCCACCGCCAATGCCGGTGTG
CTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACCGCGTCGGGTCTTATCGTAGCGATCCCGGCGATTTTCTTTCATCG
CTTTCTGCAGAGCCGCGTCGATGAGCTGGTGGTCGGCATGGAACAACAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGCGATGTCGATCTGATCGACGCCAAGATCGATCTCAAGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.095

88.235

0.689

Multiple sequence alignment