Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   BKM03_RS09770 Genome accession   NZ_CP026562
Coordinates   1949453..1951669 (+) Length   738 a.a.
NCBI ID   WP_005739741.1    Uniprot ID   A0A2S4IDP0
Organism   Pseudomonas avellanae strain R2leaf     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1944453..1956669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM03_RS09760 (BKM03_09760) - 1946340..1947191 (-) 852 WP_005739743.1 DUF4123 domain-containing protein -
  BKM03_RS09765 (BKM03_09765) tssI 1947188..1949215 (-) 2028 WP_005739742.1 type VI secretion system tip protein VgrG -
  BKM03_RS09770 (BKM03_09770) comA 1949453..1951669 (+) 2217 WP_005739741.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BKM03_RS09775 (BKM03_09775) exbB 1951712..1952428 (+) 717 WP_007245835.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  BKM03_RS09780 (BKM03_09780) - 1952425..1952856 (+) 432 WP_003381117.1 biopolymer transporter ExbD -
  BKM03_RS09785 (BKM03_09785) lpxK 1952856..1953851 (+) 996 WP_005739740.1 tetraacyldisaccharide 4'-kinase -
  BKM03_RS09790 (BKM03_09790) - 1953869..1954054 (+) 186 WP_003381112.1 Trm112 family protein -
  BKM03_RS09795 (BKM03_09795) kdsB 1954051..1954815 (+) 765 WP_005739739.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  BKM03_RS09800 (BKM03_09800) murB 1954850..1955869 (+) 1020 WP_005739738.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80682.93 Da        Isoelectric Point: 10.3658

>NTDB_id=270272 BKM03_RS09770 WP_005739741.1 1949453..1951669(+) (comA) [Pseudomonas avellanae strain R2leaf]
MRTGMIALALGLVVLRFLPALPPTWLVLLMPILALMLLPFRTYPLALFLLGFTWACVSAQWALNDRLQQRLDGQTLWLQG
KVVGLPSVAEGVVRFELEHATSRRAKLPALIRVAWYGGPEVRSGERWRLAVKLKRPGGLVNPDAFDYQAWLLAQRIGATG
TVVDGRRLAPAHAAWRDGIRQRLLAVDAQGREGGLAALVLGDGSGLSSGDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRALPWLPSACALAFIAALGYGLLAGFEVPVRRACVMVGMVLLWRLRFRHLGVVWPFLISFNAVLIVEPL
VTLQPGFWLSFAAVGILVLIFSGRLGSWSWWQSWTRAQWLIAIGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
IGTLLLPFPVVGEGLLWLAGGALEWLFVFLGWVAEALPAWLPSAVPGWAWLLSLLGAFVLLLPKGVPLRLLGWPLLLLCV
FPPLKSVPMGQVEVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKSGVRHLDLMLISHADADHAGGA
AAVHRAFPVNRVLGGELTRLAPQLDARLCENNERWEWDGVVFSTWRWEQAPDGNAGSCMLSVDAGGERLLLTGDIDVHAE
RAAMDSGFDLRAHWLQAPHHGSRSSSSKVFLQAVAPVGVLISRGQNNAFGHPHPLVMSRYRWLGITHHDSAELGAISLQL
GAFGQPRAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=270272 BKM03_RS09770 WP_005739741.1 1949453..1951669(+) (comA) [Pseudomonas avellanae strain R2leaf]
ATGCGCACAGGGATGATCGCGCTCGCGTTGGGGCTTGTGGTCCTACGCTTTCTGCCCGCTTTACCGCCGACCTGGCTCGT
GTTGCTGATGCCGATACTGGCGTTGATGCTGCTGCCGTTTCGCACCTATCCACTGGCACTGTTTCTGCTCGGCTTCACCT
GGGCGTGTGTTTCGGCGCAGTGGGCATTGAATGACCGTTTGCAGCAACGGCTGGACGGCCAGACGCTGTGGCTGCAAGGC
AAAGTGGTCGGTTTGCCGAGCGTTGCCGAGGGCGTGGTTCGTTTCGAGCTGGAGCACGCCACGTCGCGGCGGGCGAAGCT
GCCTGCGCTGATTCGTGTGGCGTGGTACGGCGGCCCTGAGGTGCGCAGCGGCGAGCGTTGGCGCCTGGCGGTCAAGCTCA
AGCGCCCCGGTGGGCTGGTCAACCCTGATGCTTTCGATTATCAGGCCTGGCTGCTGGCCCAGCGCATCGGCGCGACCGGT
ACGGTGGTGGACGGTCGAAGGTTGGCGCCCGCGCATGCGGCCTGGCGCGACGGTATTCGTCAGCGTTTGCTGGCGGTCGA
TGCACAGGGCAGGGAAGGCGGGCTGGCCGCGCTGGTGCTGGGCGATGGCTCGGGGTTGTCGAGTGGCGACTGGCAGGTGC
TGCAAGACACCGGCACCGTGCACCTGCTGGTGATTTCCGGTCAGCACATTGGCTTGCTTGCTGGCGTGATTTACGCGCTG
GTCGCAGGTCTCGCACGCTGGGGACTGTGGCCACGGGCTTTGCCCTGGCTGCCCTCGGCCTGTGCGCTGGCGTTCATCGC
TGCGCTGGGCTACGGATTGCTGGCCGGTTTCGAGGTGCCGGTGCGGCGCGCCTGTGTGATGGTCGGCATGGTCTTGCTGT
GGCGTTTGCGCTTTCGGCATCTGGGCGTGGTCTGGCCGTTTTTGATTTCCTTCAACGCGGTGCTGATCGTTGAGCCGTTG
GTGACGTTGCAGCCGGGTTTCTGGCTGTCTTTTGCAGCGGTCGGCATTCTGGTACTGATTTTCAGTGGCCGTCTGGGTAG
CTGGAGCTGGTGGCAGAGCTGGACGCGCGCGCAGTGGCTGATCGCTATCGGCCTGCTGCCGATTCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGCCCGTTTGCCAACCTGCTCGCGGTGCCTTGGGTCAGTGTGATCGTCCTGCCGCCAGCGTTG
ATCGGGACGTTATTGCTGCCGTTTCCTGTTGTCGGTGAAGGCCTGCTCTGGCTGGCGGGAGGCGCGCTGGAATGGCTATT
CGTGTTTCTCGGTTGGGTGGCCGAGGCCTTGCCCGCCTGGCTGCCCAGTGCGGTGCCTGGCTGGGCGTGGCTATTGAGTC
TGCTCGGGGCCTTTGTTTTATTGCTGCCCAAAGGTGTGCCGCTGCGCCTGTTGGGTTGGCCATTATTGTTGCTGTGCGTG
TTTCCGCCGCTCAAGTCCGTGCCGATGGGGCAGGTCGAGGTGTTGCAACTGGACGTGGGGCAGGGGCTGGCGATTCTGCT
GCGCACCCGCAATCACACGCTGCTCTACGACGCAGGGCCGCGTTTCGGTGAGTTCGATATAGGCCAAAGGGTGGTCGTGC
CCGCGATGCGCAAGTCCGGTGTTCGCCATCTGGACTTGATGCTGATCAGCCATGCCGATGCGGATCATGCTGGCGGGGCG
GCAGCGGTTCATCGGGCATTTCCGGTGAACCGAGTGTTGGGCGGGGAACTGACCCGGCTCGCCCCGCAACTCGATGCCCG
GCTGTGTGAGAACAACGAGCGCTGGGAATGGGATGGCGTGGTGTTTTCCACCTGGCGCTGGGAGCAGGCGCCCGACGGCA
ATGCCGGGTCCTGCATGCTGAGCGTCGACGCCGGTGGTGAGCGTCTGCTGCTGACGGGCGACATTGATGTGCACGCCGAG
CGTGCGGCAATGGACAGCGGTTTTGACCTTCGTGCCCACTGGTTGCAGGCTCCGCATCACGGCAGCCGCAGTTCATCCTC
CAAAGTGTTTCTGCAGGCGGTTGCGCCGGTGGGCGTGCTGATTTCCCGTGGGCAGAACAATGCTTTCGGTCATCCGCATC
CTTTGGTCATGTCGCGGTACCGATGGTTGGGAATTACCCACCATGACAGCGCCGAACTAGGTGCCATCAGTCTGCAACTG
GGGGCGTTCGGCCAGCCTCGGGCGGAACGGGCGCAGCGGCGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-674)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S4IDP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.547

97.019

0.617
  comA Ralstonia pseudosolanacearum GMI1000

32.5

100

0.37

Multiple sequence alignment