Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   BKM03_RS09775 Genome accession   NZ_CP026562
Coordinates   1951712..1952428 (+) Length   238 a.a.
NCBI ID   WP_007245835.1    Uniprot ID   A0A2G7MEY6
Organism   Pseudomonas avellanae strain R2leaf     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1946712..1957428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM03_RS09765 (BKM03_09765) tssI 1947188..1949215 (-) 2028 WP_005739742.1 type VI secretion system tip protein VgrG -
  BKM03_RS09770 (BKM03_09770) comA 1949453..1951669 (+) 2217 WP_005739741.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BKM03_RS09775 (BKM03_09775) exbB 1951712..1952428 (+) 717 WP_007245835.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  BKM03_RS09780 (BKM03_09780) - 1952425..1952856 (+) 432 WP_003381117.1 biopolymer transporter ExbD -
  BKM03_RS09785 (BKM03_09785) lpxK 1952856..1953851 (+) 996 WP_005739740.1 tetraacyldisaccharide 4'-kinase -
  BKM03_RS09790 (BKM03_09790) - 1953869..1954054 (+) 186 WP_003381112.1 Trm112 family protein -
  BKM03_RS09795 (BKM03_09795) kdsB 1954051..1954815 (+) 765 WP_005739739.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  BKM03_RS09800 (BKM03_09800) murB 1954850..1955869 (+) 1020 WP_005739738.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25863.42 Da        Isoelectric Point: 7.9105

>NTDB_id=270273 BKM03_RS09775 WP_007245835.1 1951712..1952428(+) (exbB) [Pseudomonas avellanae strain R2leaf]
MIEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRIAPPHLLGQAWQWIQEKKLDNEKLKQLRAD
SPLGEILAAGLANSKHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIEIFGSFNSTGATANAGV
LASGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGSKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=270273 BKM03_RS09775 WP_007245835.1 1951712..1952428(+) (exbB) [Pseudomonas avellanae strain R2leaf]
ATGATAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCGGGTGGCTGGATGATGCTGCC
GATCATTTTGAGCTCCATCGCCGCTGCCGGCATTATCATCGAACGCCTGTGGACCCTGCGCGCCAGCCGCATCGCGCCGC
CGCACCTGCTGGGTCAGGCATGGCAGTGGATTCAGGAAAAGAAACTCGATAACGAAAAACTCAAGCAACTGCGCGCCGAC
TCGCCGCTGGGCGAAATCCTTGCCGCTGGCCTGGCCAATTCCAAGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGA
AGCCGCCGCCCGTGTCATCCATGACCTGGAACGCTACCTGAGCGCGCTGGGCTCTATCGCAGCAATGGCCCCGTTGCTCG
GTTTGCTCGGGACGGTGCTGGGCATGATCGAGATCTTCGGTTCGTTCAACAGCACCGGTGCAACGGCCAATGCCGGTGTG
CTGGCGAGCGGTATCTCCAAGGCACTGATCTGTACTGCGTCGGGCCTTATCGTGGCAATCCCGGCGATCTTCTTTCACCG
CTTTCTGCAAAGCCGTGTCGATGAGCTGGTGGTCGGCATGGAGCAGCAGGCGATTCGTCTGGTTGAGGTGGTGCAGGGCG
ACCGTGATGTCGATCTGATCGACGCCAAGATCGACCTCAAATCGCTGGCCAGGGCAGGCGGGAGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G7MEY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.571

88.235

0.693

Multiple sequence alignment