Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CH582_RS00200 Genome accession   NZ_CP031689
Coordinates   42521..43186 (+) Length   221 a.a.
NCBI ID   WP_105894713.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P621-7028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 37521..48186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH582_RS00175 (CH582_00175) crp 39060..39734 (-) 675 WP_005647998.1 cAMP-activated global transcriptional regulator CRP Regulator
  CH582_RS00180 (CH582_00180) - 39719..39970 (-) 252 WP_005647999.1 YheU family protein -
  CH582_RS00185 (CH582_00185) slmA 39992..40648 (-) 657 WP_005648000.1 nucleoid occlusion factor SlmA -
  CH582_RS00190 (CH582_00190) dut 40652..41107 (-) 456 WP_005631431.1 dUTP diphosphatase -
  CH582_RS00195 (CH582_00195) coaBC 41155..42357 (-) 1203 WP_105894712.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CH582_RS00200 (CH582_00200) radC 42521..43186 (+) 666 WP_105894713.1 RadC family protein Machinery gene
  CH582_RS00205 (CH582_00205) rpmB 43400..43636 (+) 237 WP_005542826.1 50S ribosomal protein L28 -
  CH582_RS00210 (CH582_00210) rpmG 43648..43818 (+) 171 WP_005613503.1 50S ribosomal protein L33 -
  CH582_RS00215 (CH582_00215) - 44166..45530 (+) 1365 WP_074039351.1 diaminobutyrate--2-oxoglutarate transaminase -
  CH582_RS00220 (CH582_00220) vapB2 45677..45910 (+) 234 WP_005648011.1 type II toxin-antitoxin system antitoxin VapB2 -
  CH582_RS00225 (CH582_00225) vapC 45910..46308 (+) 399 WP_005651560.1 type II toxin-antitoxin system tRNA(fMet)-specific endonuclease VapC -
  CH582_RS00230 (CH582_00230) ddc 46328..47863 (+) 1536 WP_105894714.1 L-2,4-diaminobutyrate decarboxylase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24951.20 Da        Isoelectric Point: 6.5991

>NTDB_id=270211 CH582_RS00200 WP_105894713.1 42521..43186(+) (radC) [Haemophilus influenzae strain P621-7028]
MENNDELMPREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGSLHALLSADKKAFCSVKGLGITQFIQLQ
AITEMTKRYLKQDMLSTPIINDPETVKLFLLTELQHEEREVFIVLFLDNQHRLIKKERLFLGTINVSAVYPREIIKEALY
CNAAALILAHNHPSGITEPSYSDQLITKKIQDAAELMEIRVLDHLIVGKSDCYSFAENCLL

Nucleotide


Download         Length: 666 bp        

>NTDB_id=270211 CH582_RS00200 WP_105894713.1 42521..43186(+) (radC) [Haemophilus influenzae strain P621-7028]
ATGGAAAACAATGATGAATTAATGCCACGGGAAAAATTGCTGGCATTCGGAGCAAAAGCATTAAGTGATTATGAACTACT
TGCGATTTTTTTACGCACTGGTATCAAAGGTTGTCCTGTTATGTCACTTTCTAAAAATGTATTAACGCATTTTGGCTCCT
TGCACGCTTTACTTTCCGCAGATAAAAAAGCTTTCTGTTCTGTAAAAGGCTTAGGTATTACGCAATTTATTCAACTGCAA
GCGATTACGGAAATGACCAAGCGTTATTTAAAGCAAGATATGTTAAGTACGCCGATTATTAATGATCCTGAAACGGTAAA
ACTTTTTTTACTCACTGAATTGCAACACGAGGAAAGAGAAGTATTTATAGTTTTATTTTTAGATAATCAACATCGTTTGA
TTAAAAAAGAGCGGTTATTTTTAGGTACAATTAATGTATCAGCGGTTTATCCGCGAGAAATTATTAAAGAAGCACTCTAT
TGTAATGCGGCAGCTTTAATTTTGGCACATAATCATCCTTCAGGTATAACGGAGCCGAGTTATTCGGATCAGCTTATTAC
TAAAAAAATTCAAGATGCGGCTGAACTAATGGAAATTCGCGTGCTTGATCATTTAATTGTAGGGAAAAGCGATTGTTATT
CTTTCGCGGAGAATTGTTTATTATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(8-74)

RadC-like JAB domain (RadC)

(100-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

98.643

100

0.986
  radC Streptococcus pneumoniae TIGR4

37.674

97.285

0.367
  radC Streptococcus pneumoniae R6

37.209

97.285

0.362
  radC Streptococcus pneumoniae D39

37.209

97.285

0.362

Multiple sequence alignment