Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   CH602_RS05995 Genome accession   NZ_CP031687
Coordinates   1217443..1219482 (-) Length   679 a.a.
NCBI ID   WP_042603038.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P641-4342     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1212443..1224482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH602_RS05985 (CH602_05985) - 1212992..1215262 (+) 2271 WP_042593949.1 NADP-dependent malic enzyme -
  CH602_RS05990 (CH602_05990) - 1215487..1217412 (+) 1926 WP_038441063.1 LTA synthase family protein -
  CH602_RS05995 (CH602_05995) uvrB 1217443..1219482 (-) 2040 WP_042603038.1 excinuclease ABC subunit UvrB Machinery gene
  CH602_RS06005 (CH602_06005) zevB 1220097..1221065 (-) 969 WP_042593950.1 zinc transporter permease subunit ZevB -
  CH602_RS06010 (CH602_06010) zevA 1221068..1221688 (-) 621 WP_005694310.1 zinc transporter binding subunit ZevA -
  CH602_RS06015 (CH602_06015) - 1222013..1222318 (+) 306 WP_005650215.1 type II toxin-antitoxin system RelE/ParE family toxin -
  CH602_RS06020 (CH602_06020) - 1222329..1222652 (+) 324 WP_005650217.1 HigA family addiction module antitoxin -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 77565.98 Da        Isoelectric Point: 5.0392

>NTDB_id=270131 CH602_RS05995 WP_042603038.1 1217443..1219482(-) (uvrB) [Haemophilus influenzae strain P641-4342]
MSEKINTKPFILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLAPNKTLAAQLYA
EMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYL
QMMLHLQQGAIIDQRQILAKLAELQYTRNDQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSF
GAVPRFTIYPKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCSGIENYSHYLSG
RNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSAT
PGPYELEKSGSEIIDQVVRPTGLLDPLIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRY
LHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYAD
NITKSMEKAITETNRRREKQTKYNEEHGIVPQALNKKVGELLDIGQGANQKAKANKQRGKMSAEPTALYNAPKNAKEYQQ
QIKKLEQQMYKFAQDLEFEKAAAIRDQLHQLREQFVFDN

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=270131 CH602_RS05995 WP_042603038.1 1217443..1219482(-) (uvrB) [Haemophilus influenzae strain P641-4342]
ATGTCTGAAAAAATCAACACAAAACCATTCATTCTGCATTCCGACTTTCGTCCCTCTGGCGATCAGCCACAAGCTATCGA
AAAATTGGCTGAAAATTTAACGGATGGTTTGGCGCATCAAACTTTACTCGGGGTAACTGGCTCGGGGAAGACGTTTACTA
TCGCCAATGTAATCGCTCAATTAAATCGCCCCGCGATGTTACTTGCACCGAATAAAACCCTTGCTGCTCAGCTTTATGCA
GAAATGAAAGCTTTTTTTCCAGAAAATGCGGTGGAATATTTTGTGTCTTACTATGATTATTATCAGCCAGAAGCCTATGT
GCCAAGCAGTGATACATTTATTGAAAAAGATGCGTCTATTAATGATCAAATTGAACAAATGCGACTTTCTGCGACGAAAT
CTTTTCTAGAACGTCGAGATACCATCGTGGTGGCTTCTGTTTCTGCAATTTATGGTTTGGGCGATCCTGATAGCTATTTA
CAAATGATGTTGCATTTACAACAAGGTGCCATTATCGATCAACGCCAAATTTTAGCGAAGTTAGCGGAATTGCAATATAC
CCGAAATGATCAAGCATTTCAGCGTGGAACTTTCCGTGTTCGCGGAGAAATTATTGATATTTTCCCTGCGGAATCTGATG
ATCGTGCGGTGCGTATTGAATTATTTGATGATGAAATCGAGCGTTTAAGTTTATTTGATCCGCTCACTGGTAGTAGTTTT
GGTGCTGTACCACGTTTTACGATCTATCCTAAAACTCACTATGTGACGCCAAGAGAACGTATTTTAGATGCGATAGAAAA
CATCAAAAAAGAACTGGTATCACGCCGTGAATACTTCATTAAAGAACATAAACTTTTAGAAGAACAGCGTATCAGCCAAC
GAACCCAATTTGATATTGAAATGATGAATGAATTGGGCTATTGCTCGGGAATTGAAAACTACTCTCACTATTTATCGGGC
AGAAATGAGGGCGAACCACCACCAACATTATTTGATTATATGCCCTCTGATGCGATTTTAATTATTGATGAATCTCATGT
AACTGTGCCTCAAATTGGTGGGATGTATCGTGGTGACCGTTCACGTAAAGAAACCTTAGTCGAATATGGTTTCCGTTTGC
CGTCCGCATTGGATAATCGTCCGTTACGCTTTGAGGAATTTGAACGCTTAGCTCCGCAAACCATTTATGTTTCCGCAACA
CCAGGGCCTTATGAATTAGAAAAATCAGGCAGTGAAATCATCGATCAAGTGGTTCGCCCCACTGGTTTGCTTGATCCGCT
TATTGAAATTCGTCCAGTGTCAATTCAAGTGGATGATTTACTTTCCGAAGCTCGCCAAAGAGCGGATAAAAATGAGCGAG
TTTTAGTCACAACACTCACTAAAAAAATGGCGGAAGATTTAACGGATTATTTAGATGAACACGGGATTCGTGTGCGTTAT
CTACATTCTGATATTGATACCGTGGAACGCGTCGAAATTATCCGTGATTTGCGTTTAGGCGAATTTGATGTATTAGTGGG
AATTAACTTATTGCGTGAAGGTTTAGATATTCCAGAAGTGTCTCTTGTGGCGATTTTAGATGCAGACAAAGAAGGATTTT
TACGTTCCGAACGTTCTTTAATTCAAACCATCGGTCGTGCTGCACGAAACTTAAATGGTAAAGCGATTTTATATGCGGAT
AACATCACAAAATCCATGGAAAAAGCCATCACCGAAACCAATCGTCGTCGTGAAAAACAAACAAAATACAATGAAGAACA
CGGCATTGTGCCACAAGCATTAAATAAGAAAGTCGGCGAATTGTTAGATATTGGGCAAGGTGCAAACCAAAAAGCGAAAG
CCAATAAACAACGTGGAAAAATGTCGGCAGAACCAACCGCACTTTATAATGCACCGAAAAATGCCAAAGAATATCAACAA
CAAATCAAAAAACTGGAACAACAAATGTATAAATTTGCGCAAGATTTGGAATTTGAAAAAGCCGCGGCAATTCGCGATCA
ATTACATCAATTGCGTGAACAATTTGTTTTTGATAACTAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(557-598)

Type III restriction enzyme, res subunit (ResIII)

(20-102)

UvrB interaction domain (UvrB_inter)

(164-254)

UvrB/uvrC motif (UVR)

(640-674)

Helicase conserved C-terminal domain (Helicase_C)

(446-549)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.292

98.969

0.567
  uvrB Streptococcus pneumoniae R6

57.292

98.969

0.567
  uvrB Streptococcus pneumoniae D39

57.292

98.969

0.567

Multiple sequence alignment