Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CH613_RS00210 Genome accession   NZ_CP031684
Coordinates   43072..43737 (+) Length   221 a.a.
NCBI ID   WP_041174703.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P652-8881     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 38072..48737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH613_RS00185 (CH613_00185) crp 39611..40285 (-) 675 WP_005647998.1 cAMP-activated global transcriptional regulator CRP Regulator
  CH613_RS00190 (CH613_00190) - 40270..40521 (-) 252 WP_005647999.1 YheU family protein -
  CH613_RS00195 (CH613_00195) slmA 40543..41199 (-) 657 WP_005648000.1 nucleoid occlusion factor SlmA -
  CH613_RS00200 (CH613_00200) dut 41203..41658 (-) 456 WP_005631431.1 dUTP diphosphatase -
  CH613_RS00205 (CH613_00205) coaBC 41706..42908 (-) 1203 WP_012054541.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CH613_RS00210 (CH613_00210) radC 43072..43737 (+) 666 WP_041174703.1 DNA repair protein RadC Machinery gene
  CH613_RS00215 (CH613_00215) rpmB 43950..44186 (+) 237 WP_005542826.1 50S ribosomal protein L28 -
  CH613_RS00220 (CH613_00220) rpmG 44198..44368 (+) 171 WP_005613503.1 50S ribosomal protein L33 -
  CH613_RS00225 (CH613_00225) - 44715..46079 (+) 1365 WP_005664172.1 diaminobutyrate--2-oxoglutarate transaminase -
  CH613_RS00230 (CH613_00230) vapB2 46226..46459 (+) 234 WP_005648011.1 type II toxin-antitoxin system antitoxin VapB2 -
  CH613_RS00235 (CH613_00235) vapC 46459..46857 (+) 399 WP_005651560.1 tRNA(fMet)-specific endonuclease VapC -
  CH613_RS00240 (CH613_00240) ddc 46877..48412 (+) 1536 WP_012054543.1 L-2,4-diaminobutyrate decarboxylase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24840.03 Da        Isoelectric Point: 6.3770

>NTDB_id=269897 CH613_RS00210 WP_041174703.1 43072..43737(+) (radC) [Haemophilus influenzae strain P652-8881]
MENNDDLMPREKLLASGAKALSDYELLAIFLRTGIKGCPVISLSKNVLTHFGSLHALLSSDKKAFCSVKGLGITQFIQLQ
AITEMTKRYLKQEMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLDNQHRLIKKERLFLGTINVSAVYPREIIKEALY
CNAAALILAHNHPSGVTEPSYSDQLITKKIQDAAELMEICVLDHLIVGKSDCYSFAENCLL

Nucleotide


Download         Length: 666 bp        

>NTDB_id=269897 CH613_RS00210 WP_041174703.1 43072..43737(+) (radC) [Haemophilus influenzae strain P652-8881]
ATGGAAAACAATGATGATTTAATGCCACGGGAAAAATTGCTGGCATCCGGAGCAAAAGCATTAAGTGATTATGAACTACT
TGCGATTTTTTTACGTACTGGTATCAAAGGTTGTCCTGTTATATCACTTTCTAAAAATGTATTAACGCATTTTGGCTCCT
TGCACGCTTTACTTTCCTCAGATAAAAAAGCTTTCTGTTCTGTAAAAGGCTTAGGTATTACGCAATTTATTCAACTACAA
GCGATTACGGAAATGACCAAGCGTTATTTAAAGCAAGAGATGTTAAGTACGCCGATTATTAATGATCCTGAAACTGTAAA
ACTTTTTTTACTCACTGAATTGCAACACGAAGAAAGAGAAGTGTTTATGGTTTTATTTTTGGATAATCAACATCGTCTGA
TTAAAAAAGAGCGGTTATTTTTAGGTACAATTAATGTATCAGCGGTTTATCCTCGAGAAATTATTAAAGAAGCACTCTAT
TGTAATGCGGCAGCTTTAATTTTGGCACATAATCATCCTTCAGGTGTAACGGAGCCGAGTTATTCGGATCAGCTTATTAC
TAAAAAAATTCAAGATGCAGCTGAACTAATGGAAATTTGCGTGCTTGATCATTTAATTGTAGGGAAAAGCGATTGTTATT
CTTTCGCAGAGAATTGTTTATTATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(8-74)

RadC-like JAB domain (RadC)

(100-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

95.928

100

0.959
  radC Streptococcus pneumoniae TIGR4

38.14

97.285

0.371
  radC Streptococcus pneumoniae R6

37.674

97.285

0.367
  radC Streptococcus pneumoniae D39

37.674

97.285

0.367