Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   VIBHAR_RS02925 Genome accession   NC_009783
Coordinates   613128..615209 (-) Length   693 a.a.
NCBI ID   WP_012126793.1    Uniprot ID   -
Organism   Vibrio campbellii ATCC BAA-1116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 608128..620209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBHAR_RS02915 (VIBHAR_00623) - 609317..610708 (-) 1392 WP_012126791.1 uracil-xanthine permease family protein -
  VIBHAR_RS02920 (VIBHAR_00624) - 610961..612922 (-) 1962 WP_012126792.1 alpha/beta hydrolase family protein -
  VIBHAR_RS02925 (VIBHAR_00625) recG 613128..615209 (-) 2082 WP_012126793.1 ATP-dependent DNA helicase RecG Machinery gene
  VIBHAR_RS02930 (VIBHAR_00626) trmH 615526..616209 (-) 684 WP_012126794.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  VIBHAR_RS02935 (VIBHAR_00627) spoT 616263..618383 (-) 2121 WP_012126795.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  VIBHAR_RS02940 (VIBHAR_00629) rpoZ 618423..618693 (-) 271 Protein_520 DNA-directed RNA polymerase subunit omega -
  VIBHAR_RS02945 (VIBHAR_00630) gmk 618857..619480 (-) 624 WP_012126798.1 guanylate kinase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76659.65 Da        Isoelectric Point: 8.2064

>NTDB_id=26965 VIBHAR_RS02925 WP_012126793.1 613128..615209(-) (recG) [Vibrio campbellii ATCC BAA-1116]
MSAQMLSAVPLTSLSGVGAKVAEKLAKVGLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGKVMAVDTTFGKRKM
LTVKISDGNGTITLRFFNFTAAMKNNFSNGKLVHAYGEIKRGGMGLEIVHPDYKFYVSEQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTEQALSLLDKAAVQELLPSGLYDHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLAVR
SKGQKDVALPLASCDSLKKQLLAQLPFSPTNAQARVVKEIEADLEKTHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFEKMGIQVGWLAGKLKGKAKEAELARIASGEAKMVVGTHALFQEHVEFHHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNACL
NEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQDFKDNKLHLLVATTVIEVGVDVP
NSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRIARYIHDNYPTNAAAIIDRWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=26965 VIBHAR_RS02925 WP_012126793.1 613128..615209(-) (recG) [Vibrio campbellii ATCC BAA-1116]
ATGTCTGCCCAAATGTTATCTGCTGTTCCTTTAACTTCTCTGTCTGGAGTTGGCGCTAAAGTCGCAGAAAAACTCGCCAA
AGTTGGTTTGCATAGCGTTCAAGATCTTCTGTTTCATCTTCCTCTTCGTTACGAAGATCGCACTCGCATTTACCCAATCG
CCAAACTGCATGCCGGACTTTGGGCGGCGGTACAGGGCAAAGTCATGGCTGTCGATACTACTTTCGGCAAACGCAAAATG
CTGACGGTAAAAATCAGCGACGGCAATGGCACGATTACCCTACGCTTTTTCAACTTTACTGCCGCGATGAAGAACAATTT
CTCGAATGGTAAGTTAGTACACGCTTACGGTGAAATTAAGCGTGGCGGTATGGGCTTAGAAATTGTTCACCCTGACTACA
AGTTTTATGTAAGTGAACAAAAACCGGATGTGGAACAGAGCTTAACCCCCGTTTATCCAACCACCGATGGGTTACGCCAA
ATCACTTTGCGTAACCTGACGGAACAAGCCTTATCACTCCTCGATAAAGCCGCAGTACAAGAGTTGCTGCCTTCTGGTTT
GTACGATCACCAGATCACTATGTCGCAGGCGCTGCATACGATTCATCGACCGCCTCCAACCATTAATTTGGATGAGTTTG
ATGAAGGTAAACACCCTGCTCAAATTCGTTTGATCATGGAAGAATTACTGGCGCAGAACCTCTCTATGTTGGCAGTGCGC
AGCAAAGGACAAAAGGACGTTGCATTGCCTTTGGCGTCGTGTGACTCGCTGAAAAAGCAACTACTGGCTCAATTGCCCTT
CTCGCCGACCAATGCTCAAGCACGAGTCGTTAAAGAAATTGAAGCTGACTTAGAAAAAACGCACCCAATGATGCGCCTTG
TTCAAGGTGACGTAGGCTCGGGGAAAACTCTAGTTGCTGCGCTTGCTGCCGTCAGAGCCATTGAACACGGCTATCAAGTC
GCTTTAATGGCACCGACCGAGCTGCTCGCCGAGCAGCACGCGATTAACTTCGCTAATTGGTTCGAGAAAATGGGCATTCA
GGTCGGTTGGCTTGCAGGCAAATTGAAAGGTAAAGCCAAAGAAGCCGAACTAGCCCGAATTGCCAGTGGTGAAGCGAAAA
TGGTAGTGGGTACTCACGCCCTTTTCCAGGAGCATGTTGAGTTTCATCATCTTGCTTTGGTTATTATTGATGAACAGCAC
CGCTTTGGTGTCCACCAGCGCTTAGAGCTACGCGAGAAAGGCGCGAAACAAGGCGCTTATCCGCACCAGCTCATCATGAC
AGCAACGCCAATTCCGCGAACATTAGCCATGACAGCTTATGCTGACTTAGAAACGTCGGTGATTGATGAGTTACCGCCGG
GTCGAACACCAATCCAGACTGTCGCAATTCCAGACACCAAACGCGATGATATCGTCGAACGAGTGCGCAATGCTTGCTTA
AACGAAGGCAAACAAGCGTATTGGGTATGTACCTTAATTGATGAATCTGAGGTCTTGGAAGCTCAAGCCGCCGCTGACAC
TGCAGAAGAGCTCCAACGTAAACTGCCTGACGTAAAAATTGGCCTTGTGCACGGACGAATGAAGCCCGCTGAGAAGCAAG
CGGTAATGCAGGATTTCAAAGACAACAAGCTGCATTTACTGGTTGCAACGACAGTGATTGAAGTTGGCGTGGACGTGCCC
AATTCCAGCTTGATGATCATCGAGAACCCAGAGCGTTTAGGTTTAGCTCAGTTGCACCAGCTTAGAGGTCGTGTTGGTCG
AGGTTCAGTGGCGAGCCATTGTGTGTTGCTGTATCACTCGCCACTATCAAAAACCGCCCAAAAACGTTTAGGCGTATTAC
GTGAAAGCAACGACGGCTTTGTGATTGCACAGAAAGACTTAGAGATTCGTGGACCGGGTGAGCTTCTTGGTACCAAACAA
ACTGGCTTGGCAGATTTTAAAATTGCCGACTTAGTGCGAGATCAGCGCTTAATTCCAGAAGTTCAACGCATTGCGCGTTA
CATTCATGACAACTACCCAACGAATGCGGCAGCAATTATTGACCGTTGGTTAGGTGAGCGTGACATTTATTCTAAGGCGT
AA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

DEAD/DEAH box helicase (DEAD)

(271-433)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

RecG wedge domain (RecG_wedge)

(15-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.702

96.97

0.482
  recG/mmsA Streptococcus pneumoniae R6

39.822

97.114

0.387
  recG/mmsA Streptococcus pneumoniae R36A

39.822

97.114

0.387
  recG Bacillus subtilis subsp. subtilis str. 168

39.514

94.949

0.375

Multiple sequence alignment