Detailed information NTG0269524

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: CH639_RS00215
• Genome accession: NZ_CP031678
• Coordinates: 43444..44109 (+)
• Length: 221 a.a.
• NCBI ID: WP_013526173.1
• Uniprot ID: Q4QLV5
• Organism: Haemophilus influenzae strain P679-2791
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 38444..49109

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CH639_RS00185 (CH639_00185)	rlmC	38444..39619 (+)	1176	WP_021034785.1	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	-
CH639_RS00190 (CH639_00190)	crp	39984..40658 (-)	675	WP_005647998.1	cAMP-activated global transcriptional regulator CRP	Regulator
CH639_RS00195 (CH639_00195)	-	40643..40894 (-)	252	WP_005647999.1	YheU family protein	-
CH639_RS00200 (CH639_00200)	slmA	40916..41572 (-)	657	WP_005648000.1	nucleoid occlusion factor SlmA	-
CH639_RS00205 (CH639_00205)	dut	41576..42031 (-)	456	WP_005631431.1	dUTP diphosphatase	-
CH639_RS00210 (CH639_00210)	coaBC	42079..43281 (-)	1203	WP_011272308.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
CH639_RS00215 (CH639_00215)	radC	43444..44109 (+)	666	WP_013526173.1	RadC family protein	Machinery gene
CH639_RS00220 (CH639_00220)	rpmB	44323..44559 (+)	237	WP_005542826.1	50S ribosomal protein L28	-
CH639_RS00225 (CH639_00225)	rpmG	44571..44741 (+)	171	WP_005613503.1	50S ribosomal protein L33	-
CH639_RS00230 (CH639_00230)	-	45087..46451 (+)	1365	WP_005651563.1	diaminobutyrate--2-oxoglutarate transaminase	-
CH639_RS00235 (CH639_00235)	vapB2	46598..46831 (+)	234	WP_005648011.1	type II toxin-antitoxin system antitoxin VapB2	-
CH639_RS00240 (CH639_00240)	vapC	46831..47229 (+)	399	WP_005651560.1	type II toxin-antitoxin system tRNA(fMet)-specific endonuclease VapC	-
CH639_RS00245 (CH639_00245)	ddc	47249..48784 (+)	1536	WP_011272306.1	L-2,4-diaminobutyrate decarboxylase	-

Sequence

Protein

• Length: 221 a.a.
• Molecular weight: 25057.34 Da
• Isoelectric Point: 6.3797

>NTDB_id=269524 CH639_RS00215 WP_013526173.1 43444..44109(+) (radC) [Haemophilus influenzae strain P679-2791]
MENNDELMPREKLLAFGAKALSDYELLAIFLRTGIKDCPVMSLSKNVLTHFGSLHALLSADKKAFCSVKGLGITQFIQLQ
AITEMTKRYLKQEMLSTPIINDLETVKLFLLTELQHEEREVFMVLFLDNQHRLIKKERLFLGTINVSAVYPREIIKEALY
CNAAALILAHNHPSGITEPSYSDQLITKKIQDAAELMEIRVLDHLIVGKSDCYSFAENCLL

Nucleotide

• Length: 666 bp

>NTDB_id=269524 CH639_RS00215 WP_013526173.1 43444..44109(+) (radC) [Haemophilus influenzae strain P679-2791]
ATGGAAAACAATGATGAATTAATGCCACGGGAAAAATTGCTGGCATTCGGAGCAAAAGCATTAAGTGATTATGAACTACT
TGCGATTTTTTTACGTACTGGTATCAAAGATTGTCCTGTTATGTCACTTTCTAAAAATGTATTAACGCATTTTGGCTCCT
TGCACGCTTTACTTTCCGCAGATAAAAAAGCTTTCTGTTCTGTAAAAGGCTTAGGTATTACGCAATTTATTCAACTGCAA
GCGATTACGGAAATGACCAAGCGTTATTTAAAGCAAGAGATGTTAAGTACGCCGATTATTAATGATCTTGAAACGGTAAA
ACTTTTTTTACTCACTGAATTGCAACACGAGGAAAGAGAAGTATTTATGGTTTTATTTTTAGATAATCAACATCGTTTGA
TTAAAAAAGAGCGGTTATTTTTAGGTACAATTAATGTATCAGCGGTTTATCCGCGAGAAATTATTAAAGAAGCACTCTAT
TGTAATGCGGCAGCTTTAATTTTGGCACATAATCATCCTTCAGGTATAACGGAGCCGAGTTATTCGGATCAACTTATTAC
TAAAAAAATTCAAGATGCGGCTGAACTAATGGAAATTCGCGTGCTTGATCATTTAATTGTAGGGAAAAGCGATTGTTATT
CTTTCGCGGAGAATTGTTTATTATAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (102-218)

• UPF0758 N-terminal (UPF0758_N) (8-74)

3D structure

• AlphaFold DB: Q4QLV5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	97.738	100	0.977
radC	Streptococcus pneumoniae TIGR4	38.14	97.285	0.371
radC	Streptococcus pneumoniae R6	37.674	97.285	0.367
radC	Streptococcus pneumoniae D39	37.674	97.285	0.367