Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   C3F22_RS15645 Genome accession   NZ_CP026420
Coordinates   3214763..3215917 (-) Length   384 a.a.
NCBI ID   WP_104426934.1    Uniprot ID   -
Organism   Acinetobacter sp. ACNIH1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3209763..3220917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F22_RS15615 (C3F22_15625) - 3210190..3210735 (-) 546 WP_004780720.1 glutathione peroxidase -
  C3F22_RS15620 (C3F22_15630) - 3210910..3211455 (-) 546 WP_104426931.1 glutathione peroxidase -
  C3F22_RS15625 (C3F22_15635) - 3211647..3212558 (+) 912 WP_104426932.1 DMT family transporter -
  C3F22_RS15635 (C3F22_15645) - 3212956..3213525 (-) 570 WP_034171542.1 L-threonylcarbamoyladenylate synthase -
  C3F22_RS15640 (C3F22_15650) dprA 3213566..3214705 (-) 1140 WP_104426933.1 DNA-processing protein DprA Machinery gene
  C3F22_RS15645 (C3F22_15655) tsaP 3214763..3215917 (-) 1155 WP_104426934.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  C3F22_RS15650 (C3F22_15660) def 3216038..3216568 (+) 531 WP_004780730.1 peptide deformylase -
  C3F22_RS15655 (C3F22_15665) - 3216661..3217071 (+) 411 WP_104426935.1 DUF2946 family protein -
  C3F22_RS15660 (C3F22_15670) - 3217143..3219209 (+) 2067 WP_104426936.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42010.20 Da        Isoelectric Point: 9.0542

>NTDB_id=269244 C3F22_RS15645 WP_104426934.1 3214763..3215917(-) (tsaP) [Acinetobacter sp. ACNIH1]
MKKVLKGMPFFSALGLKNQMLALAVCVGVSMGTMYSAEAAPARNVNPPALKASAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCEGIISRYIGSTSLQPQVRVESLNNTIPVIPLAHIQQWLE
RYTIVAADSVQGTPYILGTADQRVLAGKGQKVYARGNGLVVGQRYAVYREADPYVFTDANGKKYTAALELQQVASGIAVR
GEGDVTTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPVNAENTVAGGQIVRVLGSIGTAARHSVVTIDRGTAHGVQTGH
VFSVNQKGEVVTDPKTKERVQLPGERIGNVMVFKTFDQLSYAYVLESELPIKVGANIQAPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=269244 C3F22_RS15645 WP_104426934.1 3214763..3215917(-) (tsaP) [Acinetobacter sp. ACNIH1]
ATGAAAAAGGTTTTGAAGGGCATGCCATTTTTTAGTGCCTTGGGGTTAAAAAATCAAATGCTCGCACTGGCAGTTTGTGT
CGGAGTGAGTATGGGCACAATGTATTCAGCCGAGGCAGCTCCTGCCCGCAACGTCAATCCACCTGCTTTAAAAGCCAGTG
CGCCTAATGTCTACGTGGTCAAAAAAGGCGATACATTGTGGGATATTTCAAAACGTTTCTTAAAAAATCCGGTGCGTTGG
CCAGAAATCTGGGCCAGTAACAAGCACGTGAAAAATCCACATTGGATTTTTCCAGGTGACCGCCTGTTGATGTGTGACTA
TCAAGGTCGTCCAATTATCGGTAAAGACGAAGGTGATGGCTGTGAAGGTATCATCAGTCGTTATATCGGTAGTACTTCAT
TACAACCACAGGTTCGCGTTGAATCTTTAAATAATACGATTCCAGTGATTCCATTAGCGCATATCCAGCAATGGTTGGAA
CGCTATACCATAGTGGCAGCTGATTCAGTTCAGGGTACGCCTTATATTCTCGGCACTGCAGACCAGCGCGTACTGGCCGG
TAAAGGCCAGAAGGTCTATGCACGCGGCAATGGTCTGGTGGTTGGCCAGCGTTATGCGGTGTATCGTGAGGCAGACCCTT
ATGTCTTTACCGATGCCAATGGCAAGAAATACACGGCTGCTCTAGAGCTGCAACAGGTTGCTTCCGGAATCGCAGTACGT
GGCGAAGGTGATGTCACCACGCTGGAATTGACAGATAGCTACAATGCCGAAGTGCGTCGTGGTGACCGTGTATTACCTGA
ATACGATCCGATGTTGCCTACCCTGTTCTATCCAGTGAATGCAGAAAATACGGTTGCTGGTGGTCAGATTGTGCGTGTAC
TGGGTTCAATTGGTACAGCAGCACGTCATAGTGTCGTGACGATTGACCGTGGTACGGCACATGGGGTTCAGACTGGTCAT
GTCTTTAGCGTAAACCAGAAAGGTGAAGTCGTGACTGATCCGAAAACCAAAGAGCGCGTACAGCTTCCAGGTGAGCGCAT
TGGCAATGTGATGGTCTTTAAAACTTTTGACCAGCTGAGCTATGCTTATGTGCTGGAAAGTGAGTTACCTATCAAGGTGG
GTGCCAATATTCAAGCGCCATTGTTAGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

67.532

100

0.677

Multiple sequence alignment