Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   C3F22_RS06110 Genome accession   NZ_CP026420
Coordinates   1229254..1230450 (+) Length   398 a.a.
NCBI ID   WP_104426081.1    Uniprot ID   -
Organism   Acinetobacter sp. ACNIH1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1224254..1235450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F22_RS06095 (C3F22_06105) - 1225281..1225811 (+) 531 WP_104426078.1 hypothetical protein -
  C3F22_RS06100 (C3F22_06110) - 1226365..1227414 (+) 1050 WP_104426079.1 3-deoxy-7-phosphoheptulonate synthase -
  C3F22_RS06105 (C3F22_06115) pilU 1227669..1228847 (+) 1179 WP_104426080.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  C3F22_RS06110 (C3F22_06120) pilU 1229254..1230450 (+) 1197 WP_104426081.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  C3F22_RS06115 (C3F22_06125) - 1230526..1231701 (-) 1176 WP_104426082.1 MFS transporter -
  C3F22_RS06120 (C3F22_06130) gcvH 1231954..1232328 (-) 375 WP_104426083.1 glycine cleavage system protein GcvH -
  C3F22_RS06125 (C3F22_06135) - 1232411..1233439 (-) 1029 WP_104426084.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 44960.47 Da        Isoelectric Point: 6.5073

>NTDB_id=269225 C3F22_RS06110 WP_104426081.1 1229254..1230450(+) (pilU) [Acinetobacter sp. ACNIH1]
MFTAELLDEAKKFMHHMLTKVVEYGGSDLFITADFPPSIKHQGLMKPFGQQTLTAEKTKLFAYSLMNEKQRQEFEAELEC
NFAITVPGVSRFRVNVFVQQLQVGMVIRTITAEIPNFQKLKLPESLKHVIMEKRGLVLVVGGTGSGKSTSLAAMIDYRNE
NSAGHIITVEDPVEYVHKHKKSMITHREVGVDCHSWHNALKNTLRQAPDVILIGEIRDTETMEHAIAFAETGHLCLGTLH
SNNANQTLDRIINFFPEERRNQLLMDLSSNMKAIISQRLIRTQDGKGRRAAIEIMLNTPLISDLILKGEFHELKAIMGKS
RELGMQTFDQALFDLYNEGAISYEEALRNADSTNELRLQIKLKSNRQDNPAAGEATQFTMMQEPKAEEKEQENTSASE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=269225 C3F22_RS06110 WP_104426081.1 1229254..1230450(+) (pilU) [Acinetobacter sp. ACNIH1]
ATGTTCACGGCAGAACTGTTGGACGAAGCAAAAAAATTCATGCATCACATGCTGACCAAAGTAGTGGAATATGGGGGCTC
AGACTTATTTATTACCGCAGATTTTCCACCGAGTATTAAACATCAGGGCTTAATGAAGCCCTTTGGACAACAGACCTTAA
CTGCTGAAAAAACCAAACTGTTTGCTTATAGCTTGATGAATGAAAAACAGCGTCAAGAGTTTGAAGCTGAACTGGAATGT
AACTTCGCGATTACCGTGCCGGGCGTATCGCGCTTCCGGGTAAATGTTTTCGTACAACAGCTTCAGGTCGGGATGGTAAT
CCGGACCATTACGGCAGAAATTCCAAATTTCCAGAAACTGAAATTACCAGAATCATTGAAACATGTGATTATGGAAAAAC
GCGGTCTGGTACTGGTTGTGGGAGGAACAGGTTCAGGTAAATCAACCTCTCTGGCAGCGATGATCGACTACCGTAATGAA
AATTCGGCGGGGCATATCATTACCGTGGAAGACCCAGTGGAATATGTGCATAAGCACAAGAAATCTATGATTACTCACCG
TGAAGTTGGGGTAGATTGTCATTCCTGGCACAATGCGCTGAAAAATACCTTGCGTCAGGCACCTGATGTGATTCTGATTG
GTGAGATTCGTGATACCGAAACCATGGAACACGCAATTGCCTTTGCTGAAACCGGACATTTATGTCTGGGCACACTGCAT
TCCAATAACGCCAACCAGACTTTGGACCGGATTATTAACTTCTTCCCGGAAGAACGCCGTAATCAGTTATTGATGGACTT
ATCTTCGAATATGAAGGCGATTATTTCCCAGCGTCTGATTCGTACTCAGGATGGAAAAGGGCGTCGGGCTGCAATTGAAA
TCATGTTAAATACACCTTTGATTTCTGATCTGATTCTAAAAGGTGAGTTTCATGAGCTGAAAGCCATTATGGGCAAATCT
CGTGAACTGGGCATGCAGACTTTCGATCAGGCCTTATTTGACCTGTATAACGAGGGTGCGATTTCTTATGAGGAAGCATT
GCGTAATGCTGATTCGACTAATGAATTACGTTTACAGATCAAGCTGAAAAGCAACCGCCAAGATAATCCTGCTGCTGGAG
AAGCAACACAATTCACGATGATGCAAGAACCGAAAGCTGAAGAAAAAGAACAGGAAAATACTTCAGCATCTGAATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(116-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

61.207

87.437

0.535
  pilU Acinetobacter baylyi ADP1

55.908

87.186

0.487
  pilU Vibrio cholerae strain A1552

51.507

91.709

0.472

Multiple sequence alignment