Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   C3F34_RS13600 Genome accession   NZ_CP026412
Coordinates   2879444..2880151 (-) Length   235 a.a.
NCBI ID   WP_044738506.1    Uniprot ID   A0A5N4WUF5
Organism   Acinetobacter sp. ACNIH2     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2874444..2885151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F34_RS13580 (C3F34_13580) - 2875419..2876738 (+) 1320 WP_044738509.1 adenylosuccinate synthase -
  C3F34_RS13585 (C3F34_13585) - 2876908..2877216 (+) 309 WP_016166571.1 hypothetical protein -
  C3F34_RS13590 (C3F34_13590) - 2877329..2878105 (+) 777 WP_044738508.1 M48 family metallopeptidase -
  C3F34_RS13595 (C3F34_13595) - 2878236..2879285 (-) 1050 WP_044738507.1 NADP(H)-dependent aldo-keto reductase -
  C3F34_RS13600 (C3F34_13600) crp 2879444..2880151 (-) 708 WP_044738506.1 cAMP-activated global transcriptional regulator CRP Regulator
  C3F34_RS13605 (C3F34_13605) - 2880300..2880722 (+) 423 WP_044738505.1 OsmC family protein -
  C3F34_RS13610 (C3F34_13610) clpB 2881017..2883596 (+) 2580 WP_104441840.1 ATP-dependent chaperone ClpB -
  C3F34_RS13615 (C3F34_13615) - 2883808..2885097 (+) 1290 WP_104441841.1 DUF945 family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26575.15 Da        Isoelectric Point: 4.5914

>NTDB_id=269200 C3F34_RS13600 WP_044738506.1 2879444..2880151(-) (crp) [Acinetobacter sp. ACNIH2]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFESNPQRTAEVRTRDVCEIAEITYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSGQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDVSLEQPNTDDDYEDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=269200 C3F34_RS13600 WP_044738506.1 2879444..2880151(-) (crp) [Acinetobacter sp. ACNIH2]
ATGACTTCAAATTTTTCACAGCTGAGCACTGATGCGCTATCGCCAGGTCAATTACCTGAATCAGTCAAAGCATTATTAAA
ACGAGCATATATAAACCGCTACCCTAAACGTACAACTATTGTTGATGCAGGGACGGAATCAAAATCACTTTATTTGATTT
TAAAAGGGTCAGTATCTATTATTTTACGTGAAGATGATGAACGTGAAATTGTAGTTGCATATTTAAACCCTGGGGACTTC
TTTGGGGAAATGGGGCTCTTCGAATCAAATCCGCAACGTACTGCAGAAGTACGTACACGTGATGTTTGTGAAATTGCTGA
AATTACCTATGAAAACTTCCATGAGTTAAGTAAACAATACCCTGACTTGAGCTATGCTGTATTTGCTCAATTGGTTCGTC
GTTTAAAAAACACCACCCGTAAAGTAACAGACCTTGCCTTCATTGATGTTTCTGGTCGTATTGCGCGCTGCTTGATTGAT
CTTTCAGGACAGCCAGAAGCCATGATTTTACCAAATGGTCGCCAAATCCGTATTACACGTCAAGAAATTGGTCGTATCGT
AGGTTGTTCACGCGAAATGGTTGGTCGTGTACTTAAAACCCTCGAAGACCAAGGCATGATTCAAACTGACGGTAAAGCAA
TTCTTATTTTTGATGTATCTTTAGAACAGCCAAATACTGATGATGACTACGAAGATGATGAAGAGTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5N4WUF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

94.043

100

0.94
  crp Vibrio cholerae strain A1552

46.829

87.234

0.409
  crp Haemophilus influenzae Rd KW20

48.187

82.128

0.396

Multiple sequence alignment