Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   C3F34_RS09680 Genome accession   NZ_CP026412
Coordinates   2066657..2067055 (+) Length   132 a.a.
NCBI ID   WP_104442329.1    Uniprot ID   -
Organism   Acinetobacter sp. ACNIH2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2061657..2072055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F34_RS09665 (C3F34_09665) rlmD 2062068..2063459 (+) 1392 WP_044738972.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  C3F34_RS09670 (C3F34_09670) - 2063489..2065795 (+) 2307 WP_044738971.1 RelA/SpoT family protein -
  C3F34_RS09675 (C3F34_09675) mazG 2065871..2066626 (+) 756 WP_044738970.1 nucleoside triphosphate pyrophosphohydrolase -
  C3F34_RS09680 (C3F34_09680) comEA 2066657..2067055 (+) 399 WP_104442329.1 ComEA family DNA-binding protein Machinery gene
  C3F34_RS09685 (C3F34_09685) pcnB 2067189..2068637 (+) 1449 WP_044738968.1 polynucleotide adenylyltransferase PcnB -
  C3F34_RS09690 (C3F34_09690) folK 2068634..2069122 (+) 489 WP_044738967.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  C3F34_RS09695 (C3F34_09695) panB 2069165..2069974 (+) 810 WP_044738966.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  C3F34_RS09700 (C3F34_09700) panC 2069976..2070824 (+) 849 WP_104441475.1 pantoate--beta-alanine ligase -
  C3F34_RS09705 (C3F34_09705) rapZ 2070846..2071697 (+) 852 WP_016166137.1 RNase adapter RapZ -
  C3F34_RS09710 (C3F34_09710) - 2071694..2071963 (+) 270 WP_016166136.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14996.15 Da        Isoelectric Point: 10.5078

>NTDB_id=269196 C3F34_RS09680 WP_104442329.1 2066657..2067055(+) (comEA) [Acinetobacter sp. ACNIH2]
MNFNAIRLLRMVVLLTLTIFGFDHVNAQNFDQEYLNWKAKQQAQDARLGSSRTDGSYYLSKPSLNTVSGNKIRLNSATSE
QLQQLSGIGEKKAEAILQYRQQHGKFKTVDELQQVKGIGPKLLQKNKDRLTL

Nucleotide


Download         Length: 399 bp        

>NTDB_id=269196 C3F34_RS09680 WP_104442329.1 2066657..2067055(+) (comEA) [Acinetobacter sp. ACNIH2]
ATGAATTTTAACGCTATTCGATTATTGCGAATGGTGGTGTTGTTGACATTGACGATTTTTGGATTCGATCATGTAAATGC
ACAAAACTTTGATCAAGAATACTTGAACTGGAAAGCAAAACAGCAAGCACAAGATGCTCGGCTTGGTTCATCACGCACAG
ATGGAAGCTATTATCTTTCAAAACCCAGTTTAAATACGGTATCAGGCAATAAAATACGTTTGAACAGTGCAACATCAGAA
CAATTACAGCAACTTTCAGGTATCGGTGAGAAAAAAGCTGAAGCGATTTTACAATATCGACAACAACACGGAAAGTTCAA
AACTGTGGATGAATTACAGCAGGTTAAAGGCATTGGACCGAAGCTCTTACAGAAAAACAAAGATCGATTAACTCTCTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(67-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baylyi ADP1

56.034

87.879

0.492
  comEA Acinetobacter baumannii strain A118

45.6

94.697

0.432
  comEA Acinetobacter baumannii D1279779

44

94.697

0.417

Multiple sequence alignment