Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   C3F34_RS08585 Genome accession   NZ_CP026412
Coordinates   1843343..1843975 (-) Length   210 a.a.
NCBI ID   WP_213064800.1    Uniprot ID   -
Organism   Acinetobacter sp. ACNIH2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1838343..1848975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F34_RS08550 (C3F34_08550) mlaE 1838638..1839417 (+) 780 WP_016168628.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  C3F34_RS08555 (C3F34_08555) - 1839417..1840085 (+) 669 WP_016168627.1 outer membrane lipid asymmetry maintenance protein MlaD -
  C3F34_RS08560 (C3F34_08560) - 1840105..1840737 (+) 633 WP_016168626.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  C3F34_RS08565 (C3F34_08565) - 1840750..1841034 (+) 285 WP_044739641.1 STAS domain-containing protein -
  C3F34_RS08570 (C3F34_08570) - 1841139..1842152 (-) 1014 WP_016168624.1 magnesium and cobalt transport protein CorA -
  C3F34_RS08575 (C3F34_08575) - 1842308..1842907 (+) 600 WP_104441412.1 TIGR00730 family Rossman fold protein -
  C3F34_RS08580 (C3F34_08580) - 1842907..1843308 (+) 402 WP_104441413.1 NUDIX hydrolase -
  C3F34_RS08585 (C3F34_08585) comF 1843343..1843975 (-) 633 WP_213064800.1 ComF family protein Machinery gene
  C3F34_RS08590 (C3F34_08590) recG 1843968..1846013 (-) 2046 WP_104441415.1 ATP-dependent DNA helicase RecG -
  C3F34_RS08595 (C3F34_08595) - 1846047..1846850 (+) 804 WP_104441416.1 NAD(P)H-binding protein -
  C3F34_RS08600 (C3F34_08600) - 1847046..1847273 (+) 228 WP_044739636.1 DUF6500 family protein -
  C3F34_RS08605 (C3F34_08605) - 1847409..1848257 (-) 849 WP_044739635.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24465.32 Da        Isoelectric Point: 8.8655

>NTDB_id=269191 C3F34_RS08585 WP_213064800.1 1843343..1843975(-) (comF) [Acinetobacter sp. ACNIH2]
MFKPFLSSAQQWLHSVLPCQFCGLERGRHASLCQDCWNHLPWLKQYVQRQEIEVQVACHYDYPIDRVIQQFKYEQQLHFQ
ILLTGLLKQLDYRQIQAIVPMPISTQRLAERGYNQSVILAQRLSQQLNIPVWQPIQRQHQHSQKGLSRLERLDSIEQQFK
IAPTNALRYRRVLMLDDVVTTGSSLKALQQALNELGCRKIEAACIAAAQC

Nucleotide


Download         Length: 633 bp        

>NTDB_id=269191 C3F34_RS08585 WP_213064800.1 1843343..1843975(-) (comF) [Acinetobacter sp. ACNIH2]
ATGTTTAAACCTTTTTTATCTAGCGCTCAGCAATGGCTACATTCAGTACTACCATGTCAGTTTTGTGGACTTGAGCGTGG
CCGCCATGCGAGTCTCTGTCAAGATTGCTGGAACCATTTACCTTGGCTCAAACAATACGTGCAACGTCAAGAAATTGAGG
TTCAAGTCGCCTGTCATTATGACTATCCCATTGATCGTGTGATTCAGCAATTTAAATATGAGCAACAACTACATTTTCAA
ATTTTGCTGACTGGACTGCTCAAACAACTGGACTATCGTCAAATTCAAGCCATCGTTCCCATGCCAATTTCCACTCAACG
TTTGGCTGAACGAGGTTATAACCAAAGTGTCATTCTGGCACAGCGTTTGAGTCAGCAGTTAAATATTCCTGTTTGGCAAC
CTATTCAACGGCAACATCAGCATTCACAGAAAGGCTTAAGCCGTTTAGAACGACTGGATAGCATAGAACAGCAATTTAAA
ATCGCCCCAACAAACGCTCTGCGTTATCGTCGCGTGTTAATGCTAGATGATGTGGTGACGACAGGCAGCTCACTTAAAGC
ATTGCAACAAGCTCTAAATGAACTGGGCTGCCGAAAAATTGAAGCTGCCTGTATTGCAGCAGCTCAATGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(115-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

60.287

99.524

0.6
  comF Acinetobacter baumannii D1279779

59.809

99.524

0.595

Multiple sequence alignment