Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   C3F34_RS05570 Genome accession   NZ_CP026412
Coordinates   1188181..1189590 (+) Length   469 a.a.
NCBI ID   WP_104441217.1    Uniprot ID   A0A2L0HTI1
Organism   Acinetobacter sp. ACNIH2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1183181..1194590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F34_RS05550 (C3F34_05550) - 1183874..1184494 (-) 621 WP_016168483.1 DUF6915 family protein -
  C3F34_RS05555 (C3F34_05555) pbpG 1184645..1185703 (-) 1059 WP_104441215.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  C3F34_RS05560 (C3F34_05560) - 1185921..1186556 (+) 636 WP_016168485.1 response regulator -
  C3F34_RS05565 (C3F34_05565) pilS 1186597..1188156 (+) 1560 WP_104441216.1 sensor histidine kinase Regulator
  C3F34_RS05570 (C3F34_05570) pilR 1188181..1189590 (+) 1410 WP_104441217.1 sigma-54-dependent transcriptional regulator Regulator
  C3F34_RS05575 (C3F34_05575) - 1189591..1190757 (-) 1167 WP_104441218.1 S41 family peptidase -
  C3F34_RS05580 (C3F34_05580) gpmI 1190781..1192328 (-) 1548 WP_016168489.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  C3F34_RS05585 (C3F34_05585) lptG 1192450..1193520 (-) 1071 WP_104441219.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52748.77 Da        Isoelectric Point: 5.6380

>NTDB_id=269175 C3F34_RS05570 WP_104441217.1 1188181..1189590(+) (pilR) [Acinetobacter sp. ACNIH2]
MVAQQPLVLFVDDEEDLCTLMQMMLSRMGIETHVAYRIAQAKKMLSEHHYDICFTDLNLPDGSGLELVEEISQQYPQLPV
AVLTAYGNMDIAIAALKAGAFDFVSKPIKQTHLEQLLQKALNNPVQQQAASEDALEQRMLIGQSAPIEQLRVTLKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPSDLLESELFGHKKGSFTGATQDKQGLIQSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKAIRPIGSDTEIDVDFRVISASHQDLESLVQQGKFRQDLFFRIHVMDLVLPPLRERGQDILI
LAQHFIQKVCREWEIEVKALTTRAKDFLLAQYYPGNVRELRNIIERAITLSDDDYIDVQHLQSAPLRRSVNTPVLSIDQM
LTAPSELTLAPRKLPDEGLELYLENIEKEILLNALNITHWNRTLAAKKLGMSFRSLRYRLKKFGLDTDE

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=269175 C3F34_RS05570 WP_104441217.1 1188181..1189590(+) (pilR) [Acinetobacter sp. ACNIH2]
ATAGTGGCGCAACAACCACTCGTTTTATTTGTAGATGACGAAGAAGACCTATGTACGCTGATGCAAATGATGCTCAGCCG
TATGGGGATCGAAACGCATGTGGCTTATCGTATAGCACAGGCCAAAAAAATGTTGTCTGAACATCATTATGATATTTGTT
TTACGGATTTAAATCTTCCTGACGGAAGTGGCTTGGAATTGGTTGAAGAAATTTCTCAACAATATCCGCAGTTACCTGTC
GCAGTGCTAACAGCCTACGGCAATATGGATATTGCGATCGCCGCACTCAAAGCAGGTGCTTTTGACTTTGTCAGTAAACC
GATTAAACAAACTCATCTTGAACAGCTCTTACAGAAAGCTCTGAACAATCCAGTTCAGCAACAAGCTGCTAGTGAAGATG
CACTTGAACAACGCATGTTGATTGGTCAGTCTGCACCCATCGAACAACTCCGCGTGACTTTAAAAAAAATCGCTCGCTCA
CAAGCTCCCGTGTTTATTACAGGTGAATCTGGTACAGGCAAAGAAGTTGTGGCGAACTTGGTACATCGCCTCAGTAATCG
CAACGAAGGCCCTTTTATTGCCATTAACTGTGGTGCGATTCCTTCTGACCTACTCGAAAGCGAGTTGTTTGGACACAAAA
AAGGCAGCTTTACAGGTGCAACTCAAGACAAACAAGGTTTGATTCAATCGGCACATGGCGGAAGTTTATTTCTAGATGAA
ATTGCCGAACTACCACTGAATATGCAGGTCAAATTACTCCGTGCAGTTCAAGAAAAAGCCATTCGTCCAATTGGCTCAGA
TACTGAAATTGATGTCGATTTTCGAGTGATCAGTGCCAGCCATCAAGACTTAGAATCACTGGTGCAACAGGGTAAATTCC
GACAAGACCTGTTTTTCCGCATCCATGTGATGGATCTGGTTCTACCCCCTTTACGCGAGCGTGGTCAGGATATTTTAATT
CTCGCGCAGCATTTTATTCAGAAAGTCTGCCGTGAATGGGAAATTGAAGTCAAAGCACTCACCACACGTGCGAAAGATTT
CTTACTGGCACAGTACTATCCAGGCAATGTTCGTGAACTGCGTAATATTATCGAGCGGGCCATTACTTTAAGTGATGATG
ACTATATTGATGTACAGCATTTACAAAGTGCCCCGTTGCGCCGTAGCGTCAACACCCCAGTATTATCAATCGATCAAATG
TTGACAGCACCTTCAGAATTAACGCTCGCGCCACGGAAACTGCCTGATGAAGGTTTGGAACTTTATCTAGAAAATATTGA
GAAAGAGATTCTGCTCAATGCATTGAATATTACCCATTGGAATCGTACTTTAGCAGCCAAAAAACTAGGGATGTCCTTCC
GCTCTTTGCGTTATCGCCTGAAAAAGTTTGGGCTGGATACAGATGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0HTI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

75.214

99.787

0.751
  pilR Pseudomonas aeruginosa PAK

48.156

98.294

0.473

Multiple sequence alignment