Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   C3F34_RS05565 Genome accession   NZ_CP026412
Coordinates   1186597..1188156 (+) Length   519 a.a.
NCBI ID   WP_104441216.1    Uniprot ID   A0A2L0HTH6
Organism   Acinetobacter sp. ACNIH2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1181597..1193156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F34_RS05540 (C3F34_05540) thrC 1181860..1182999 (+) 1140 WP_044738787.1 threonine synthase -
  C3F34_RS05545 (C3F34_05545) - 1183064..1183846 (-) 783 WP_104441214.1 hypothetical protein -
  C3F34_RS05550 (C3F34_05550) - 1183874..1184494 (-) 621 WP_016168483.1 DUF6915 family protein -
  C3F34_RS05555 (C3F34_05555) pbpG 1184645..1185703 (-) 1059 WP_104441215.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  C3F34_RS05560 (C3F34_05560) - 1185921..1186556 (+) 636 WP_016168485.1 response regulator -
  C3F34_RS05565 (C3F34_05565) pilS 1186597..1188156 (+) 1560 WP_104441216.1 sensor histidine kinase Regulator
  C3F34_RS05570 (C3F34_05570) pilR 1188181..1189590 (+) 1410 WP_104441217.1 sigma-54-dependent transcriptional regulator Regulator
  C3F34_RS05575 (C3F34_05575) - 1189591..1190757 (-) 1167 WP_104441218.1 S41 family peptidase -
  C3F34_RS05580 (C3F34_05580) gpmI 1190781..1192328 (-) 1548 WP_016168489.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 59691.27 Da        Isoelectric Point: 6.6746

>NTDB_id=269174 C3F34_RS05565 WP_104441216.1 1186597..1188156(+) (pilS) [Acinetobacter sp. ACNIH2]
MQHSQYFELNQYFFGLWYAAYRLLITSCLVLIFILTQDELANNYEFPQLYFYVLWGYFFINCVQFFNLKHFKQHIPQQFA
FIFIVDVIALSLLTIATNGPSLSISILFLTTIFAASLLLKTQKALIITLIAVIAVIYQQFLISFLTQHSFHNLGNSVILA
VLFFVFYACGQIAVRRFQLLDHVNFSQSQELKRLQNINRYILEQIETGYLVLDENCHIVLSNPAACALLGIAPFYAFDKY
PLYKLQPDLFELLNFDQVQNGEKFQFESQLSRYHLHIEVQKLIVPQQILTLLVIQDGQKMNQQVQQLKLAALGQLSASIA
HEIRNPLAAIVQANELLPHSTVDQQQTLSQMISKQTKRIDKIVQDTLSMVRNQATQPITIQLDHFIPLFIQEDLPDLKTK
ILCHIAPQLSLNFDEAQFRQVLINLIRNAIRHNSPERSTIELHCYTQDKNIHIDVCDFGEGVAIQDQAHLFQPFFSTAIT
GTGLGLYLSHSFCEANQALLSYVEQQQGACFRIQCRQLI

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=269174 C3F34_RS05565 WP_104441216.1 1186597..1188156(+) (pilS) [Acinetobacter sp. ACNIH2]
ATGCAACATTCCCAATATTTCGAATTAAATCAATACTTTTTCGGGCTGTGGTATGCCGCTTACCGCTTATTAATCACCAG
TTGTCTGGTCCTGATTTTTATTTTGACCCAAGATGAACTAGCAAACAACTACGAATTTCCTCAACTGTATTTTTATGTAC
TCTGGGGTTATTTTTTCATTAACTGCGTACAATTTTTTAATCTCAAACATTTTAAACAGCATATTCCGCAGCAGTTTGCA
TTCATTTTTATTGTCGATGTTATTGCCTTAAGCCTACTCACCATCGCCACCAATGGTCCAAGTTTAAGTATCAGTATTCT
GTTCTTAACCACCATTTTTGCCGCTTCATTACTCCTCAAGACACAAAAAGCCTTAATTATTACCCTCATTGCGGTGATTG
CGGTTATCTATCAACAATTCTTGATCAGCTTTCTAACCCAACACTCGTTTCATAATTTGGGTAATAGTGTCATCTTGGCG
GTTTTATTTTTTGTCTTTTATGCTTGTGGGCAAATTGCAGTTCGACGTTTTCAGCTGCTCGATCATGTCAACTTTTCCCA
ATCACAGGAATTAAAACGCCTGCAAAATATTAATCGCTATATCTTAGAGCAAATTGAAACAGGCTATCTGGTCTTAGATG
AAAACTGCCATATTGTTTTAAGTAACCCTGCCGCCTGTGCTTTATTAGGCATTGCGCCATTTTATGCTTTTGATAAATAT
CCACTGTATAAATTACAACCTGATTTGTTTGAGTTACTGAACTTTGATCAGGTACAAAACGGAGAGAAATTTCAGTTTGA
ATCTCAGCTGAGCCGCTACCATTTGCATATTGAAGTGCAGAAACTGATTGTCCCACAGCAGATACTGACACTTTTGGTGA
TTCAAGATGGGCAGAAGATGAATCAGCAGGTACAACAATTAAAATTAGCTGCGCTGGGGCAGCTCTCTGCCAGTATTGCA
CATGAAATTCGTAATCCATTAGCCGCTATTGTTCAAGCCAATGAGCTATTGCCACACAGTACAGTTGATCAGCAGCAAAC
ACTGAGCCAAATGATTAGCAAGCAGACCAAACGTATTGATAAAATTGTGCAAGACACCTTAAGTATGGTACGTAATCAAG
CCACTCAACCCATTACCATTCAGCTTGATCATTTTATTCCTCTTTTTATTCAGGAAGATCTGCCCGATCTTAAAACCAAA
ATTTTATGTCACATTGCTCCTCAACTCAGCTTAAATTTTGATGAGGCACAATTTAGGCAGGTATTAATTAATTTAATTCG
CAACGCAATCCGACATAATTCACCTGAACGCAGTACAATAGAGCTCCACTGCTATACGCAGGATAAAAACATTCACATTG
ATGTGTGTGATTTTGGGGAAGGCGTGGCGATTCAGGATCAAGCCCACCTGTTTCAACCGTTCTTTAGTACTGCAATTACA
GGAACAGGTTTAGGATTATATCTATCACATAGCTTTTGTGAGGCCAATCAAGCCCTCTTAAGCTATGTAGAACAACAACA
GGGAGCTTGCTTTCGCATTCAATGCCGACAGCTGATTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(414-514)

His Kinase A (phospho-acceptor) domain (HisKA)

(311-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0HTH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

56.859

96.917

0.551

Multiple sequence alignment