Detailed information NTG0269143

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C3F36_RS07785
• Genome accession: NZ_CP026406
• Coordinates: 1688449..1689324 (+)
• Length: 291 a.a.
• NCBI ID: WP_104454848.1
• Uniprot ID: -
• Organism: Aeromonas sp. ASNIH2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1683449..1694324

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C3F36_RS07765 (C3F36_07765)	nadC	1683669..1684532 (+)	864	WP_041213995.1	carboxylating nicotinate-nucleotide diphosphorylase	-
C3F36_RS07770 (C3F36_07770)	tapA	1684843..1685292 (+)	450	WP_324806168.1	type IVa pilus major pilin TapA	-
C3F36_RS07775 (C3F36_07775)	pilB	1685296..1687002 (+)	1707	WP_104454847.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
C3F36_RS07780 (C3F36_07780)	pilC	1687130..1688371 (+)	1242	WP_010675822.1	type II secretion system F family protein	Machinery gene
C3F36_RS07785 (C3F36_07785)	pilD	1688449..1689324 (+)	876	WP_104454848.1	A24 family peptidase	Machinery gene
C3F36_RS07790 (C3F36_07790)	coaE	1689343..1689957 (+)	615	WP_104454849.1	dephospho-CoA kinase	-
C3F36_RS07795 (C3F36_07795)	zapD	1689995..1690717 (+)	723	WP_010675825.1	cell division protein ZapD	-
C3F36_RS07800 (C3F36_07800)	yacG	1690728..1690922 (+)	195	WP_039040499.1	DNA gyrase inhibitor YacG	-
C3F36_RS07805 (C3F36_07805)	mutT	1690980..1691384 (-)	405	WP_174213873.1	8-oxo-dGTP diphosphatase MutT	-
C3F36_RS07810 (C3F36_07810)	-	1691393..1692577 (-)	1185	WP_104454850.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32099.24 Da
• Isoelectric Point: 6.8280

>NTDB_id=269143 C3F36_RS07785 WP_104454848.1 1688449..1689324(+) (pilD) [Aeromonas sp. ASNIH2]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERAWHAEYSDYFGDGEETPPATGRYNLMMPRSRCPHCDH
PIGALENIPLLSWLWLRGRCRNCHTPISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVPLADGVVGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

• Length: 876 bp

>NTDB_id=269143 C3F36_RS07785 WP_104454848.1 1688449..1689324(+) (pilD) [Aeromonas sp. ASNIH2]
ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTGGTGATCCATCGCCTGCCCATCATGATGGAGCGGGCCTGGCATGCCGAATACAGCGACTATTTCG
GTGACGGTGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGATGCCTCGCTCCCGCTGCCCCCACTGCGACCAC
CCCATAGGGGCGCTGGAGAACATTCCCCTGCTGAGCTGGCTATGGCTCAGGGGGCGCTGCCGCAACTGCCACACCCCCAT
TTCGGCTCGCTATCCCCTGGTCGAGCTGCTCACCGCCCTGCTATCGGTCTCGGTAGCAGCCGCGCTTGCCCCCGGCTGGG
GCACCCTTGCCGCTCTGCTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTCTGGGGTGGCCTGCTGTTCAATCTGGCAGGCGGTTTCGTGCCCCTGGCCGATGGGGTGGT
CGGCGCCATGGCGGGTTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCT
ATGGCGACTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTGGGATGGCAAGCATTGCCCATCGTGCTGCTGCTCTCTTCG
CTGGCGGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCCTA
TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.069	98.969	0.594
pilD	Vibrio campbellii strain DS40M4	56.207	99.656	0.56
pilD	Acinetobacter baumannii D1279779	51.971	95.876	0.498
pilD	Acinetobacter nosocomialis M2	51.971	95.876	0.498
pilD	Neisseria gonorrhoeae MS11	51.724	89.691	0.464