Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BV11031_RS21870 Genome accession   NZ_CP026362
Coordinates   4147616..4148989 (+) Length   457 a.a.
NCBI ID   WP_010328778.1    Uniprot ID   -
Organism   Bacillus vallismortis strain DSM 11031     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4142616..4153989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV11031_RS21845 (BV11031_21815) - 4142658..4143770 (-) 1113 WP_010328782.1 LCP family protein -
  BV11031_RS21850 (BV11031_21820) - 4143770..4144423 (-) 654 WP_129551018.1 YigZ family protein -
  BV11031_RS21855 (BV11031_21825) degS 4144639..4145796 (+) 1158 WP_010328781.1 two-component sensor histidine kinase DegS Regulator
  BV11031_RS21860 (BV11031_21830) degU 4145879..4146568 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BV11031_RS21865 (BV11031_21835) - 4146666..4147511 (+) 846 WP_010328779.1 DegV family protein -
  BV11031_RS21870 (BV11031_21840) comFA 4147616..4148989 (+) 1374 WP_010328778.1 ATP-dependent helicase ComFA Machinery gene
  BV11031_RS21875 (BV11031_21845) - 4149049..4149345 (+) 297 WP_010328777.1 competence protein ComFB -
  BV11031_RS21880 (BV11031_21850) comFC 4149309..4150031 (+) 723 WP_010328776.1 amidophosphoribosyltransferase Machinery gene
  BV11031_RS21885 (BV11031_21855) - 4150103..4150522 (+) 420 WP_010328775.1 TIGR03826 family flagellar region protein -
  BV11031_RS21890 (BV11031_21860) flgM 4150602..4150868 (+) 267 WP_010328774.1 flagellar biosynthesis anti-sigma factor FlgM -
  BV11031_RS21895 (BV11031_21865) flgN 4150883..4151365 (+) 483 WP_010328773.1 flagellar protein FlgN -
  BV11031_RS21900 (BV11031_21870) flgK 4151384..4152907 (+) 1524 WP_010328772.1 flagellar hook-associated protein FlgK -
  BV11031_RS21905 (BV11031_21875) flgL 4152917..4153813 (+) 897 WP_010328771.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 52102.04 Da        Isoelectric Point: 9.9533

>NTDB_id=268870 BV11031_RS21870 WP_010328778.1 4147616..4148989(+) (comFA) [Bacillus vallismortis strain DSM 11031]
MNMTFSKELQQTLQGRHLLRTEVPFSDELIEWHIKNGYIGAQNSISKNKREYRCNRCGQNDQRYFSNYHSSGKKQLYCRS
CVMMGRVSEEVPLYSWKEEDELHWKPIKLTWNGELSRGQQKAANVLIEAISRKKELLIWAVCGAGKTEILFPGIESALNQ
GLRVCIATPRTDVVLELAPRLKAAFQGADIAALYGSSEDKGRLSPLVISTTHQLLRYKDAFDVIIVDEVDAFPYSADQTL
QFAVQKAKKKISTLVYLSATPSKELKRKTMNGQLHSIRIPARHHQKPLPEPRFLWCGNWKKKLTRNKIPPAVKRWIEFHV
KEGRPVFLFVPSVSVLEKAAACFKDIHCRTASVHAEDKDRKEKVQQFRDGQLDLLITTTILERGVTVHKVQTGILGAESP
IFTESALVQIAGRTGRHKEYADGDVTFFHYGKTKSMLDARKHIKEMNALAEKNERTD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=268870 BV11031_RS21870 WP_010328778.1 4147616..4148989(+) (comFA) [Bacillus vallismortis strain DSM 11031]
ATGAACATGACTTTCTCAAAAGAATTACAGCAGACGCTTCAAGGCCGTCATTTGCTCAGAACTGAAGTCCCATTTTCCGA
TGAGCTGATTGAATGGCATATCAAGAACGGTTATATTGGCGCTCAAAACTCAATATCCAAAAATAAACGGGAGTATAGGT
GTAATAGGTGCGGCCAAAATGATCAGCGTTATTTTTCTAATTATCACTCATCTGGAAAGAAGCAGCTGTATTGCCGTTCC
TGTGTCATGATGGGAAGAGTAAGTGAGGAAGTGCCTTTATATTCATGGAAAGAGGAGGATGAACTCCATTGGAAGCCTAT
CAAGCTGACTTGGAATGGCGAGCTCTCAAGGGGACAGCAAAAAGCCGCCAATGTCTTAATTGAAGCAATATCCAGAAAAA
AAGAACTCCTCATCTGGGCAGTTTGCGGCGCTGGCAAAACTGAGATATTATTCCCCGGTATAGAGTCAGCATTAAATCAA
GGACTGCGTGTATGTATTGCGACACCCCGCACCGATGTTGTATTAGAGCTAGCTCCGAGGCTCAAGGCCGCTTTTCAGGG
CGCTGACATTGCGGCACTATACGGGAGCAGCGAGGACAAAGGGCGTTTATCTCCTCTTGTGATTTCCACTACACATCAGC
TTTTGCGATATAAAGACGCATTCGATGTTATCATCGTTGATGAAGTTGATGCTTTTCCGTATTCCGCTGATCAAACTCTT
CAATTCGCTGTTCAAAAAGCCAAAAAGAAAATCAGCACGCTGGTTTATTTAAGTGCAACACCTTCTAAAGAACTAAAAAG
AAAAACAATGAACGGACAGCTGCATTCAATTCGCATTCCAGCAAGACACCACCAGAAACCTCTTCCAGAACCGCGTTTTC
TATGGTGCGGAAACTGGAAAAAGAAATTAACCCGAAATAAAATCCCGCCAGCGGTAAAAAGATGGATAGAGTTTCATGTG
AAAGAAGGGAGGCCTGTGTTTTTATTTGTTCCCTCCGTTTCTGTTTTAGAAAAGGCAGCGGCCTGCTTTAAAGATATTCA
TTGCCGAACGGCGTCTGTTCATGCGGAAGATAAGGACAGAAAAGAAAAAGTACAGCAATTCAGAGATGGTCAGCTTGATC
TTTTAATCACAACAACAATATTAGAAAGAGGCGTTACGGTTCATAAGGTGCAAACAGGGATATTAGGGGCGGAATCACCT
ATCTTTACGGAAAGCGCACTTGTGCAAATCGCAGGAAGAACCGGCCGGCATAAAGAATACGCGGACGGCGATGTTACTTT
CTTTCATTACGGAAAAACAAAGAGCATGCTGGATGCAAGAAAGCATATAAAAGAAATGAATGCTTTGGCGGAAAAAAATG
AAAGAACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(114-262)

Helicase conserved C-terminal domain (Helicase_C)

(320-417)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

87.939

99.781

0.877

Multiple sequence alignment