Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BV11031_RS21860 Genome accession   NZ_CP026362
Coordinates   4145879..4146568 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus vallismortis strain DSM 11031     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4140879..4151568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV11031_RS21840 (BV11031_21810) - 4141509..4142585 (+) 1077 WP_010328783.1 MraY family glycosyltransferase -
  BV11031_RS21845 (BV11031_21815) - 4142658..4143770 (-) 1113 WP_010328782.1 LCP family protein -
  BV11031_RS21850 (BV11031_21820) - 4143770..4144423 (-) 654 WP_129551018.1 YigZ family protein -
  BV11031_RS21855 (BV11031_21825) degS 4144639..4145796 (+) 1158 WP_010328781.1 two-component sensor histidine kinase DegS Regulator
  BV11031_RS21860 (BV11031_21830) degU 4145879..4146568 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BV11031_RS21865 (BV11031_21835) - 4146666..4147511 (+) 846 WP_010328779.1 DegV family protein -
  BV11031_RS21870 (BV11031_21840) comFA 4147616..4148989 (+) 1374 WP_010328778.1 ATP-dependent helicase ComFA Machinery gene
  BV11031_RS21875 (BV11031_21845) - 4149049..4149345 (+) 297 WP_010328777.1 competence protein ComFB -
  BV11031_RS21880 (BV11031_21850) comFC 4149309..4150031 (+) 723 WP_010328776.1 amidophosphoribosyltransferase Machinery gene
  BV11031_RS21885 (BV11031_21855) - 4150103..4150522 (+) 420 WP_010328775.1 TIGR03826 family flagellar region protein -
  BV11031_RS21890 (BV11031_21860) flgM 4150602..4150868 (+) 267 WP_010328774.1 flagellar biosynthesis anti-sigma factor FlgM -
  BV11031_RS21895 (BV11031_21865) flgN 4150883..4151365 (+) 483 WP_010328773.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=268869 BV11031_RS21860 WP_003219701.1 4145879..4146568(+) (degU) [Bacillus vallismortis strain DSM 11031]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=268869 BV11031_RS21860 WP_003219701.1 4145879..4146568(+) (degU) [Bacillus vallismortis strain DSM 11031]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGGGACGACGGAGATGAAGCGGCTCGTATTGTCGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACCGGCGCGAGAGGTTATCTGCTGAAAGA
GATGGATGCCGATACATTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGAGGTTCTTATCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTTCGCCGTCTTGCAACAAGCGGAGTTTCTGCACACCCTCAGCATGAGGTCTACCCTGAAATCCGC
AGACCATTACATATCTTAACTAGACGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATCGG
TGAATCATTGTTTATCAGTGAGAAAACCGTCAAAAACCATGTGAGCAATATCTTGCAGAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment