Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   BV11031_RS20825 Genome accession   NZ_CP026362
Coordinates   3939244..3939363 (-) Length   39 a.a.
NCBI ID   WP_003222023.1    Uniprot ID   A0A9Q4EZF5
Organism   Bacillus vallismortis strain DSM 11031     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3934244..3944363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV11031_RS20795 (BV11031_20770) - 3934905..3935465 (-) 561 WP_041952542.1 hypothetical protein -
  BV11031_RS20800 (BV11031_20775) - 3935458..3936105 (-) 648 WP_010328977.1 ABC transporter ATP-binding protein -
  BV11031_RS20815 (BV11031_20790) - 3937581..3938369 (-) 789 WP_010328974.1 membrane protein -
  BV11031_RS20820 (BV11031_20795) - 3938526..3938999 (-) 474 WP_010328973.1 hypothetical protein -
  BV11031_RS20825 (BV11031_20800) phrF 3939244..3939363 (-) 120 WP_003222023.1 phosphatase RapF inhibitor PhrF Regulator
  BV11031_RS20830 (BV11031_20805) rapF 3939347..3940492 (-) 1146 WP_010328972.1 response regulator aspartate phosphatase RapF Regulator
  BV11031_RS20840 (BV11031_20815) - 3940722..3942077 (+) 1356 WP_010328971.1 YncE family protein -
  BV11031_RS20845 (BV11031_20820) - 3942118..3943491 (+) 1374 WP_010328970.1 YncE family protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4226.12 Da        Isoelectric Point: 10.4997

>NTDB_id=268863 BV11031_RS20825 WP_003222023.1 3939244..3939363(-) (phrF) [Bacillus vallismortis strain DSM 11031]
MKLKSKLLLSCLALSTVFIATNIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=268863 BV11031_RS20825 WP_003222023.1 3939244..3939363(-) (phrF) [Bacillus vallismortis strain DSM 11031]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCCCTAAGCACTGTTTTCATCGCAACGAATATTGCAAATGCACC
CACACACCAAATTGAAGTTGCACAGCGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

92.593

69.231

0.641
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment