Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   BV11031_RS20830 Genome accession   NZ_CP026362
Coordinates   3939347..3940492 (-) Length   381 a.a.
NCBI ID   WP_010328972.1    Uniprot ID   -
Organism   Bacillus vallismortis strain DSM 11031     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3934347..3945492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV11031_RS20795 (BV11031_20770) - 3934905..3935465 (-) 561 WP_041952542.1 hypothetical protein -
  BV11031_RS20800 (BV11031_20775) - 3935458..3936105 (-) 648 WP_010328977.1 ABC transporter ATP-binding protein -
  BV11031_RS20815 (BV11031_20790) - 3937581..3938369 (-) 789 WP_010328974.1 membrane protein -
  BV11031_RS20820 (BV11031_20795) - 3938526..3938999 (-) 474 WP_010328973.1 hypothetical protein -
  BV11031_RS20825 (BV11031_20800) phrF 3939244..3939363 (-) 120 WP_003222023.1 phosphatase RapF inhibitor PhrF Regulator
  BV11031_RS20830 (BV11031_20805) rapF 3939347..3940492 (-) 1146 WP_010328972.1 response regulator aspartate phosphatase RapF Regulator
  BV11031_RS20840 (BV11031_20815) - 3940722..3942077 (+) 1356 WP_010328971.1 YncE family protein -
  BV11031_RS20845 (BV11031_20820) - 3942118..3943491 (+) 1374 WP_010328970.1 YncE family protein -
  BV11031_RS20850 (BV11031_20825) - 3943531..3944904 (+) 1374 WP_129551009.1 YncE family protein -
  BV11031_RS22735 - 3944988..3945149 (-) 162 Protein_4040 hypothetical protein -
  BV11031_RS20855 (BV11031_20830) albB 3945146..3945307 (-) 162 WP_010328969.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbB -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45646.93 Da        Isoelectric Point: 5.0649

>NTDB_id=268864 BV11031_RS20830 WP_010328972.1 3939347..3940492(-) (rapF) [Bacillus vallismortis strain DSM 11031]
MTGVISSSSVGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLVEIDKKQARLTGVLDYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFKKAYSMAEAENQPQLMGRTLYNIGLCKNSQSQYED
AVTYFKRAITVFEESNILPSLPQAYFLITQIHYKLGKMDKAHAYHSKGTAYSQEAGDSIYLSEFEFLKSLYLSGPDEEAI
QRFFDFLESKMLYADLEDFALDVAKYYHERENFQKASAYFLKVEQVRQLIQGGVRLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=268864 BV11031_RS20830 WP_010328972.1 3939347..3940492(-) (rapF) [Bacillus vallismortis strain DSM 11031]
GTGACAGGTGTCATATCTTCTTCTTCCGTCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAGTATTTACGAAGAGAAATCAAACAAGAGCTGGATCAAATGGAAGAAGATCAAGATCTTCATTTGTACTATT
CACTGATGGAATTCCGGCACAACCTGATGCTTGAGTACCTTGAACCACTAGAAAAAATGCGGATCGAGGAACAGCCGCGG
CTGTCTGATTTGCTGGTTGAGATTGATAAAAAACAGGCTCGTTTAACCGGAGTCCTTGATTATTACTTTAATTTCTTCAG
GGGCATGTACGAACTGGATCAGCGGGAATATCTGTCGGCTATTAAATTTTTTAAAAAGGCCGAAAGCAAGTTAATATTCG
TTAAGGATCGGATCGAGAAGGCAGAGTTTTTCTTTAAGATGTCTGAGTCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCCCGGCAGGCATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTTCAGTGTCACTCTTT
ATTTGCTACCAATTTCTTAGATCTGAAACAATATGAGGACGCCATATCACATTTTAAAAAAGCTTACTCTATGGCGGAAG
CTGAGAATCAGCCCCAATTAATGGGGAGAACATTGTACAACATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAC
GCCGTAACCTATTTCAAAAGAGCAATAACTGTTTTTGAAGAATCTAACATTCTTCCGTCCCTGCCCCAAGCCTATTTTTT
GATTACACAAATACATTATAAATTGGGGAAAATGGATAAAGCCCATGCATATCATAGTAAGGGAACAGCTTATTCTCAAG
AGGCCGGAGATTCAATCTATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCTGATGAAGAAGCAATT
CAAAGATTCTTTGATTTCCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTCTTGATGTGGCAAAATATTA
TCATGAACGTGAAAACTTTCAAAAAGCCTCTGCTTATTTCCTAAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGATTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)

Tetratricopeptide repeat (TPR_12)

(223-290)

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(132-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

95.276

100

0.953
  rapC Bacillus subtilis subsp. subtilis str. 168

57.895

99.738

0.577

Multiple sequence alignment