Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SHEWANA3_RS19965 Genome accession   NC_008577
Coordinates   4587097..4588623 (+) Length   508 a.a.
NCBI ID   WP_011718559.1    Uniprot ID   -
Organism   Shewanella sp. ANA-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4582097..4593623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHEWANA3_RS19940 (Shewana3_3815) - 4582169..4583119 (+) 951 WP_011718555.1 calcium/sodium antiporter -
  SHEWANA3_RS19945 (Shewana3_3816) - 4583296..4584000 (+) 705 WP_011718556.1 hypothetical protein -
  SHEWANA3_RS19950 (Shewana3_3817) - 4584084..4585163 (+) 1080 WP_011718557.1 sensor histidine kinase -
  SHEWANA3_RS19955 (Shewana3_3818) - 4585163..4585759 (+) 597 WP_011624346.1 response regulator transcription factor -
  SHEWANA3_RS19960 (Shewana3_3819) - 4585765..4586880 (-) 1116 WP_011718558.1 DUF1963 domain-containing protein -
  SHEWANA3_RS19965 (Shewana3_3820) comM 4587097..4588623 (+) 1527 WP_011718559.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SHEWANA3_RS19970 (Shewana3_3821) - 4588724..4589617 (+) 894 WP_011718560.1 acyltransferase -
  SHEWANA3_RS19975 (Shewana3_3822) - 4589625..4590566 (+) 942 WP_011718561.1 acyltransferase -
  SHEWANA3_RS19980 (Shewana3_3823) - 4590627..4591100 (-) 474 WP_011718562.1 DUF523 domain-containing protein -
  SHEWANA3_RS19985 (Shewana3_3824) - 4591449..4592237 (+) 789 WP_011718563.1 GntR family transcriptional regulator -
  SHEWANA3_RS19990 (Shewana3_3825) prpB 4592304..4593182 (+) 879 WP_011624869.1 methylisocitrate lyase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55133.50 Da        Isoelectric Point: 7.8441

>NTDB_id=26886 SHEWANA3_RS19965 WP_011718559.1 4587097..4588623(+) (comM) [Shewanella sp. ANA-3]
MAIACVHTRASCGVEAPEVIVEVHLSNGLPAFNLVGLPEASVKEARERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAIGILAASEQIPASSLKNTEFVGELALSGQIRHCQGLLPAIIAAKRHNNQLILPLENRHDAELVGYHGVYFASHL
QSLAAFLHGQAPLPMLEQQLEWISDEAPTTQPCLSDVIGQYQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRIMALLPI
LNYEEALEVAAIHSVAGINIKPQDFLKRPFRAPHHTSSSISLVGGGSIPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFLSRFQLIAAMNPSPSGDIEGANRATPDQVQRYLARLSGPFLDRFDLTIEVPKLPAGTLTQPT
TTSETSDEIAKRVKRARDSQLARAGVLNSELSGKQLKQFGGLSDADLGFLEQSVVKLGLSVRSFHRIQRVARTIADLEQA
PNIERRHLAQALGYRAMDKLLARLSQQY

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=26886 SHEWANA3_RS19965 WP_011718559.1 4587097..4588623(+) (comM) [Shewanella sp. ANA-3]
ATGGCGATAGCCTGCGTGCATACCCGAGCCAGTTGCGGTGTTGAGGCTCCAGAAGTCATAGTGGAAGTGCATCTCAGTAA
TGGTCTACCCGCCTTTAATCTGGTGGGCTTACCCGAAGCCTCGGTCAAAGAAGCGCGCGAGCGTGTACGCAGCGCCTTGA
TTAATGCGGGATTTGAATTCCCCATGCGGCGGATAACGGTTAATCTCGCGCCGGCGGACTTACCTAAACAAGGGGGTCGT
TACGATTTGCCCATCGCCATAGGCATTCTGGCGGCTTCGGAGCAAATCCCCGCCAGCAGCCTTAAAAATACCGAATTTGT
CGGCGAGCTCGCACTCTCGGGGCAGATACGCCATTGCCAAGGATTACTGCCCGCCATCATTGCGGCTAAACGCCATAATA
ATCAGTTAATTCTTCCCTTAGAGAATCGCCACGATGCCGAGCTTGTGGGCTATCACGGGGTCTATTTTGCTTCCCATTTG
CAAAGCCTAGCCGCATTTCTCCACGGACAAGCGCCATTGCCTATGCTCGAACAACAGCTCGAATGGATTAGCGATGAGGC
GCCAACCACCCAGCCTTGCCTGAGCGATGTCATAGGCCAGTATCAAGCTAAACAAGCCCTCGAAATCGCCGCGGCCGGAA
ACCATAACCTGTTGATGCTAGGTCCGCCGGGCACGGGTAAAACCATGTTAGCCAGCCGAATTATGGCGCTACTGCCCATA
CTCAATTACGAAGAGGCATTAGAGGTAGCCGCCATCCATTCGGTGGCGGGCATTAATATCAAACCGCAGGATTTTCTAAA
GCGGCCATTTCGCGCGCCGCACCATACCAGTTCGTCCATCTCCTTGGTCGGCGGAGGCAGCATTCCCAAACCGGGGGAAA
TCTCCCTCGCCCATCGCGGCGTGTTGTTTTTGGATGAAGTCGCCGAGTTCCCCCGTAAGGTGCTCGATTGCCTGCGTGAA
CCCATGGAAACGGGTGAAGTAGTGATCTCCCGCGCTGCCGCTAAGTTAACCTTTTTGAGCCGCTTTCAGTTGATCGCCGC
CATGAATCCCAGCCCAAGCGGCGATATTGAAGGGGCGAACCGCGCCACACCCGATCAGGTTCAGCGTTATCTCGCTAGAC
TCTCGGGGCCCTTTTTAGATAGGTTCGACCTCACCATCGAAGTCCCAAAACTCCCCGCGGGCACACTCACACAACCAACA
ACGACCAGCGAAACCAGTGATGAAATCGCTAAGCGAGTCAAACGCGCCCGCGATAGCCAACTGGCGCGAGCAGGCGTGCT
CAACAGTGAACTCTCGGGAAAACAGCTAAAACAATTCGGCGGCCTTAGCGACGCCGACTTAGGCTTTTTAGAACAGAGTG
TCGTCAAGCTCGGGTTATCCGTTCGCAGCTTCCATCGCATTCAACGTGTTGCCCGCACCATTGCCGATCTGGAGCAAGCA
CCCAATATCGAACGGCGCCACCTCGCCCAAGCCTTAGGTTATCGCGCCATGGACAAACTATTAGCCCGCTTATCCCAGCA
GTATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.53

100

0.571
  comM Haemophilus influenzae Rd KW20

56.607

99.803

0.565
  comM Glaesserella parasuis strain SC1401

56.324

99.606

0.561
  comM Vibrio campbellii strain DS40M4

56.102

100

0.561
  comM Legionella pneumophila str. Paris

47.244

100

0.472
  comM Legionella pneumophila strain ERS1305867

47.244

100

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.34

99.016

0.429

Multiple sequence alignment