Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BV11031_RS18380 Genome accession   NZ_CP026362
Coordinates   3472893..3474269 (-) Length   458 a.a.
NCBI ID   WP_010327705.1    Uniprot ID   -
Organism   Bacillus vallismortis strain DSM 11031     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3467893..3479269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV11031_RS18360 (BV11031_18330) ispF 3469410..3469886 (-) 477 WP_010327709.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  BV11031_RS18365 (BV11031_18335) ispD 3469879..3470577 (-) 699 WP_010327708.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  BV11031_RS18370 (BV11031_18340) - 3470592..3471692 (-) 1101 WP_010327707.1 PIN/TRAM domain-containing protein -
  BV11031_RS18375 (BV11031_18345) disA 3471807..3472889 (-) 1083 WP_010327706.1 DNA integrity scanning diadenylate cyclase DisA -
  BV11031_RS18380 (BV11031_18350) radA 3472893..3474269 (-) 1377 WP_010327705.1 DNA repair protein RadA Machinery gene
  BV11031_RS18385 (BV11031_18355) clpC 3474361..3476793 (-) 2433 WP_010327704.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  BV11031_RS18390 (BV11031_18360) - 3476790..3477881 (-) 1092 WP_010327703.1 protein arginine kinase -
  BV11031_RS18395 (BV11031_18365) mcsA 3477881..3478438 (-) 558 WP_010327702.1 protein-arginine kinase activator protein McsA -
  BV11031_RS18400 (BV11031_18370) ctsR 3478452..3478916 (-) 465 WP_010327701.1 transcriptional regulator CtsR -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49558.07 Da        Isoelectric Point: 7.6838

>NTDB_id=268855 BV11031_RS18380 WP_010327705.1 3472893..3474269(-) (radA) [Bacillus vallismortis strain DSM 11031]
MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMMKKAPANRRAAFSHSVQTVQKPSPITTIETSEEPRVKTQLGEF
NRVLGGGVIKGSLVLIGGDPGIGKSTLLLQVSAQLSDSSNSVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYIS
SAIEEMNPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSAGSSITASMEGTRPILVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAISIASSFRDTPPNPADCFIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRMIIPAANLEGWTKPKGIEVIGVANVAEALRTSLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=268855 BV11031_RS18380 WP_010327705.1 3472893..3474269(-) (radA) [Bacillus vallismortis strain DSM 11031]
ATGGCTAAAACAAAATCGAAATTCATCTGCCAATCCTGCGGTTACGAGTCTCCAAAATGGATGGGGAAATGTCCGGGCTG
CGGTGCTTGGAATACAATGGTGGAAGAAATGATGAAAAAGGCACCGGCCAATCGGAGAGCGGCTTTTTCTCATTCTGTTC
AAACTGTACAGAAACCTTCACCTATTACAACAATTGAAACATCAGAAGAACCCCGTGTTAAAACCCAGCTTGGCGAATTT
AACAGGGTGCTCGGCGGGGGAGTCATTAAAGGCTCACTCGTGTTAATCGGCGGTGATCCCGGTATCGGAAAGTCCACGTT
GTTACTGCAAGTTTCAGCTCAATTATCAGATTCATCGAACAGTGTATTGTACATTTCGGGAGAAGAATCGGTTAAACAAA
CGAAACTGAGAGCAGATCGTCTCGGCATTAATAATCCGTCGCTGCATGTTTTATCTGAAACCGATATGGAGTATATTTCG
TCTGCTATAGAAGAGATGAATCCAGCGTTTGTCGTTGTTGACTCTATTCAAACGGTTTACCAAAGCGATATCACATCGGC
TCCCGGCAGTGTGTCACAGGTCAGAGAGTGTACGGCTGAGCTGATGAAAATTGCCAAAACAAAAGGCATTCCGATCTTTA
TCGTAGGACACGTAACAAAAGAAGGGTCTATTGCAGGGCCGAGATTGCTGGAGCATATGGTTGACACTGTTTTATACTTT
GAAGGAGAACGTCACCATACTTTTCGTATATTGAGAGCAGTAAAAAACCGTTTTGGTTCTACAAACGAAATGGGTATTTT
CGAAATGCGTGAAGAGGGACTCACCGAGGTTTTGAACCCTTCAGAAATTTTCTTGGAAGAGCGCTCAGCAGGATCTGCTG
GCTCGAGCATAACTGCCTCTATGGAAGGCACGAGGCCGATTCTCGTTGAAATTCAGGCGCTCATCTCGCCGACAAGTTTT
GGAAATCCGCGGCGTATGGCAACGGGTATAGACCATAACAGGGTTTCGCTGTTAATGGCTGTGTTAGAAAAAAGAGTTGG
GCTGCTGCTGCAAAATCAGGATGCCTATTTGAAAGTAGCTGGCGGCGTAAAGCTTGATGAACCGGCAATTGATCTTGCCA
TTGCGATCAGCATCGCGTCCAGTTTTAGAGACACACCCCCAAATCCTGCCGATTGTTTTATAGGTGAAGTGGGATTAACC
GGAGAAGTCCGGCGGGTTTCTAGAATTGAACAGCGTGTGAAAGAAGCGGCTAAGCTTGGTTTCAAACGCATGATCATACC
CGCGGCAAATCTGGAAGGCTGGACAAAACCAAAAGGGATTGAGGTTATCGGAGTAGCAAATGTTGCAGAGGCGCTTCGTA
CTTCATTAGGAGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

98.253

100

0.983
  radA Streptococcus pneumoniae Rx1

63.135

98.908

0.624
  radA Streptococcus pneumoniae D39

63.135

98.908

0.624
  radA Streptococcus pneumoniae R6

63.135

98.908

0.624
  radA Streptococcus pneumoniae TIGR4

63.135

98.908

0.624
  radA Streptococcus mitis NCTC 12261

63.135

98.908

0.624
  radA Streptococcus mitis SK321

62.914

98.908

0.622

Multiple sequence alignment