NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	DZL40_RS09055	Genome accession	NZ_CP031639
Coordinates	1791258..1791854 (-)	Length	198 a.a.
NCBI ID	WP_011285268.1	Uniprot ID	Q48QW4
Organism	Streptococcus pyogenes strain MGAS7914
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1786258..1796854

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DZL40_RS09020 (DZL40_09015)	-	1786318..1786623 (-)	306	WP_002982199.1	DUF1292 domain-containing protein	-
DZL40_RS09025 (DZL40_09020)	ruvX	1786635..1787054 (-)	420	WP_002982196.1	Holliday junction resolvase RuvX	-
DZL40_RS09030 (DZL40_09025)	-	1787051..1787320 (-)	270	WP_002982194.1	IreB family regulatory phosphoprotein	-
DZL40_RS09035 (DZL40_09030)	spx	1787434..1787832 (-)	399	WP_002982188.1	transcriptional regulator Spx	-
DZL40_RS09040 (DZL40_09035)	recA	1788123..1789259 (-)	1137	WP_011285265.1	recombinase RecA	Machinery gene
DZL40_RS09045 (DZL40_09040)	cinA	1789348..1790619 (-)	1272	WP_011285266.1	competence/damage-inducible protein A	Machinery gene
DZL40_RS09050 (DZL40_09045)	-	1790688..1791248 (-)	561	WP_011018314.1	DNA-3-methyladenine glycosylase I	-
DZL40_RS09055 (DZL40_09050)	ruvA	1791258..1791854 (-)	597	WP_011285268.1	Holliday junction branch migration protein RuvA	Machinery gene
DZL40_RS09060 (DZL40_09055)	-	1791856..1793076 (-)	1221	WP_011285269.1	MFS transporter	-
DZL40_RS09065 (DZL40_09060)	hexB	1793087..1795069 (-)	1983	WP_021340699.1	DNA mismatch repair endonuclease MutL	Machinery gene
DZL40_RS09070 (DZL40_09065)	-	1795164..1796315 (-)	1152	WP_003058754.1	site-specific integrase	-
DZL40_RS09905 (DZL40_09070)	-	1796637..1796780 (+)	144	WP_110410861.1	putative holin-like toxin	-

Sequence

Protein

Download Length: 198 a.a. Molecular weight: 21811.12 Da Isoelectric Point: 6.2537

                                >NTDB_id=268600 DZL40_RS09055 WP_011285268.1 1791258..1791854(-) (ruvA) [Streptococcus pyogenes strain MGAS7914]

MYDYIKGQLTKITAKYIVVETNGLGYIINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI

GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGNTKARSNKAGNTQLDEAIEAL

LALGYKAAELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide

Download Length: 597 bp

                                >NTDB_id=268600 DZL40_RS09055 WP_011285268.1 1791258..1791854(-) (ruvA) [Streptococcus pyogenes strain MGAS7914]

ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAACAAATGGACTAGGCTATAT

TATCAATGTAGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAACTGGTAACTATTTACCTGCATCAAGTGATTCGTG

AGGATGCTCACTTGTTGTTTGGGTTTCATACGGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCTGGCATT

GGCCCCACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA

GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG

CTCCACAAGAGACTGGTAATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC

CTTGCCCTCGGTTATAAGGCAGCGGAATTGAAGAAAATTCGTGCCTTCTTTGAAGGAACCTCTGAAACGGCCGAACAATA

CATCAAATCAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-196)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q48QW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Streptococcus pneumoniae TIGR4	67.005	99.495	0.667
ruvA	Streptococcus pneumoniae R6	67.005	99.495	0.667
ruvA	Streptococcus pneumoniae D39	67.005	99.495	0.667
ruvA	Bacillus subtilis subsp. subtilis str. 168	41.379	100	0.424

Detailed information NTG0268600