Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   Aba810CP_RS17095 Genome accession   NZ_CP026338
Coordinates   3485867..3486277 (-) Length   136 a.a.
NCBI ID   WP_002041921.1    Uniprot ID   A0AB36M071
Organism   Acinetobacter baumannii strain 810CP     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3480867..3491277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aba810CP_RS17065 (Aba810CP_17060) - 3480953..3481222 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  Aba810CP_RS17070 (Aba810CP_17065) rapZ 3481219..3482070 (-) 852 WP_000821671.1 RNase adapter RapZ -
  Aba810CP_RS17075 (Aba810CP_17070) panC 3482093..3482941 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  Aba810CP_RS17080 (Aba810CP_17075) panB 3482945..3483754 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  Aba810CP_RS17085 (Aba810CP_17080) folK 3483800..3484282 (-) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  Aba810CP_RS17090 (Aba810CP_17085) pcnB 3484279..3485742 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  Aba810CP_RS17095 (Aba810CP_17090) comEA 3485867..3486277 (-) 411 WP_002041921.1 ComEA family DNA-binding protein Machinery gene
  Aba810CP_RS17100 (Aba810CP_17095) mazG 3486246..3487052 (-) 807 WP_000359487.1 nucleoside triphosphate pyrophosphohydrolase -
  Aba810CP_RS17105 (Aba810CP_17100) - 3487164..3487937 (+) 774 WP_000682843.1 SDR family oxidoreductase -
  Aba810CP_RS17110 (Aba810CP_17105) - 3487982..3490288 (-) 2307 WP_000259109.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15668.92 Da        Isoelectric Point: 10.3828

>NTDB_id=268335 Aba810CP_RS17095 WP_002041921.1 3485867..3486277(-) (comEA) [Acinetobacter baumannii strain 810CP]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=268335 Aba810CP_RS17095 WP_002041921.1 3485867..3486277(-) (comEA) [Acinetobacter baumannii strain 810CP]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCACAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

46.847

81.618

0.382

Multiple sequence alignment