Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PRJ_RS19935 Genome accession   NZ_CP026332
Coordinates   4285778..4287991 (-) Length   737 a.a.
NCBI ID   WP_104962904.1    Uniprot ID   -
Organism   Pseudomonas sp. XWY-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4280778..4292991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PRJ_RS19900 (PRJ_3954) murB 4281129..4282148 (-) 1020 WP_104962286.1 UDP-N-acetylmuramate dehydrogenase -
  PRJ_RS19905 (PRJ_3955) - 4282145..4282609 (-) 465 WP_064491353.1 low molecular weight protein-tyrosine-phosphatase -
  PRJ_RS19910 (PRJ_3956) kdsB 4282609..4283373 (-) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PRJ_RS19915 (PRJ_3957) - 4283370..4283555 (-) 186 WP_003247142.1 Trm112 family protein -
  PRJ_RS19920 (PRJ_3958) lpxK 4283600..4284601 (-) 1002 WP_104962287.1 tetraacyldisaccharide 4'-kinase -
  PRJ_RS19925 (PRJ_3959) - 4284601..4285035 (-) 435 WP_010952926.1 biopolymer transporter ExbD -
  PRJ_RS19930 (PRJ_3960) exbB 4285032..4285667 (-) 636 WP_026031862.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PRJ_RS19935 (PRJ_3961) comA 4285778..4287991 (-) 2214 WP_104962904.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PRJ_RS19940 - 4288134..4288646 (+) 513 Protein_3778 DUF2062 domain-containing protein -
  PRJ_RS19945 (PRJ_3963) - 4288650..4289429 (-) 780 WP_003247128.1 ABC transporter permease -
  PRJ_RS19950 (PRJ_3964) - 4289426..4290358 (-) 933 WP_010952922.1 ABC transporter ATP-binding protein -
  PRJ_RS19955 (PRJ_3965) - 4290492..4291115 (-) 624 WP_010952921.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79453.39 Da        Isoelectric Point: 10.4818

>NTDB_id=268269 PRJ_RS19935 WP_104962904.1 4285778..4287991(-) (comA) [Pseudomonas sp. XWY-1]
MRTGMFALALGLLCLGFLPALPSVGWLITLAACAVGSLFTRVWPLGWFLLGLCWACGSAQQALDDRLAAGLEGRTLWLEG
RVAGLPARTAHGVRFELEAPRSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPDGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVAGGWRDALRQRLLMVEANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLGAFFPLLLALVAVLVFEPL
AALLPGFWLSFAAVATLIYCFSARLGGWRPWQAWTRAQWVIAVGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLMLPLTGVGEALLWLAGGLLDVLFRGLALVAQQRPAWMPPALPLWAWLLVCLGTLLVLLPRGVPLRGLGGVMLLALW
VPREPVPFGQVEVWQLDVGQGLAVLLRTRHHSLLYDAGPARGESDLGERVVLPTLRKLGVGGLDVMVISHAHADHAGGAG
AIARGLPIKRIIGGEALVDIPLQPCASGEQWDWDGVRFSLWRWVDGQSSNDRSCVLLVEAQGERLLLAGDMEAAAERAWL
ADTEVPRIDWLQAPHHGSRSSSTEAFVRATAPRGVLISRGRNNSFGHPHVQVVERYGRHGVVMNDTAVEGALRLVLGRHG
VVEGVRGQRRFWRVRGE

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=268269 PRJ_RS19935 WP_104962904.1 4285778..4287991(-) (comA) [Pseudomonas sp. XWY-1]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTGCCCGCATTGCCATCGGTCGGATGGTT
GATAACCCTGGCAGCCTGCGCTGTCGGCAGCCTGTTTACCCGCGTCTGGCCGCTGGGTTGGTTTCTGCTGGGCTTGTGTT
GGGCGTGCGGGTCTGCTCAGCAGGCCCTTGATGATCGTCTGGCTGCCGGCCTGGAGGGGCGCACCTTGTGGCTGGAGGGG
CGGGTGGCGGGTTTGCCGGCCCGTACTGCACACGGTGTGCGTTTCGAGCTGGAAGCGCCACGCTCGCGGCGGGCCGAACT
GCCTCAGCGCCTGCAACTGAGCTGGTTCGACGGCCCGCCGCTGCGGGCGGGCGAGCAGTGGCGGCTGGCCGTGACCTTGC
AGCGCCCGGACGGGCTGCTGAACCCGCATGGGCCCGACCGTGAAGCGCAGTTGCTGGCGCGACGGGTGGGCGCGACGGGT
ACGGTCAAGGCGGGGCAGTTGCTGGCGCCAGTCGCCGGTGGTTGGCGCGATGCACTGCGTCAGCGCTTGCTGATGGTCGA
AGCCAATGGCCGACAGGCAGCGCTGGTGGCCCTGGTGCTTGGCGATGGTGCGGGCCTGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATTTCCGGCCAGCACATCGGCCTGGTCGCCGGTTTGCTCTATGGCCTG
GTCGCCGGGCTGGCGCGTTGGGGGCTATGGCCGGCAAGGCTACCGTGGTTGCCCTGGGCCTGCGGCCTGGCCATGGCCGC
AGCGCTGGCCTACGGGTGGCTGGCTGGCGGTGGGGTGCCAGTACAGCGGGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGTCTGCGCTTTCGCCACCTTGGCGCGTTTTTTCCGTTGCTTCTTGCACTGGTCGCCGTGCTTGTCTTCGAGCCACTG
GCGGCGTTGCTGCCTGGGTTCTGGCTGTCGTTCGCCGCCGTGGCCACGCTCATCTACTGCTTCAGTGCCCGGTTGGGTGG
TTGGCGGCCCTGGCAGGCCTGGACACGAGCGCAATGGGTGATCGCTGTCGGCTTGCTGCCGGTGTTGCTGGCCACCGGCT
TGCCGGTGAGCCTCAGTGCGCCGCTGGCCAACCTTGTGGCGGTGCCGTGGGTCAGCCTGGCGGTCTTGCCGTTGGCGTTG
CTGGGCACGCTGATGTTGCCGCTGACGGGCGTTGGCGAGGCGTTGCTCTGGCTGGCAGGTGGCCTGCTGGATGTGCTGTT
CCGCGGGCTGGCGCTGGTGGCGCAGCAGCGCCCGGCATGGATGCCGCCGGCCCTGCCGTTGTGGGCCTGGCTGCTGGTAT
GTCTGGGTACGCTGTTGGTTTTGCTGCCCCGTGGTGTGCCGCTGCGCGGGTTGGGAGGGGTGATGCTGCTGGCGCTGTGG
GTGCCCCGGGAGCCGGTGCCGTTCGGCCAGGTCGAGGTCTGGCAGCTGGATGTTGGCCAGGGGCTGGCGGTGCTATTGCG
TACGCGGCATCACAGCCTGCTCTACGATGCCGGGCCGGCCAGGGGGGAAAGCGACCTGGGGGAACGCGTGGTGCTGCCAA
CCTTGCGCAAGTTGGGGGTGGGCGGCCTTGACGTGATGGTGATCAGCCATGCGCACGCCGATCATGCGGGCGGGGCCGGA
GCCATTGCGCGTGGTTTGCCGATCAAGCGGATAATCGGTGGGGAAGCACTGGTTGATATTCCGTTGCAGCCTTGTGCCAG
TGGCGAGCAATGGGATTGGGATGGCGTGCGCTTTTCGCTGTGGCGCTGGGTGGACGGGCAGAGTAGTAATGACCGTTCCT
GTGTCTTGTTGGTGGAAGCGCAGGGCGAGCGCTTGCTGCTGGCGGGGGATATGGAAGCTGCTGCCGAAAGGGCCTGGCTG
GCGGACACTGAAGTGCCGCGTATCGACTGGCTGCAGGCGCCGCATCATGGCAGCCGCAGCTCGTCCACCGAGGCGTTCGT
CCGGGCTACCGCACCGCGCGGGGTATTGATTTCGCGGGGGCGCAACAACAGCTTCGGGCACCCGCACGTGCAGGTGGTCG
AACGGTATGGGCGGCATGGGGTGGTGATGAATGATACGGCGGTGGAGGGGGCATTGCGGTTGGTGCTGGGGCGGCATGGG
GTAGTCGAGGGGGTTAGGGGGCAGCGGCGGTTCTGGCGGGTTCGAGGGGAGTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(12-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.472

97.693

0.571
  comA Ralstonia pseudosolanacearum GMI1000

34.566

100

0.368

Multiple sequence alignment