Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PRJ_RS19930 Genome accession   NZ_CP026332
Coordinates   4285032..4285667 (-) Length   211 a.a.
NCBI ID   WP_026031862.1    Uniprot ID   A0AA34WU07
Organism   Pseudomonas sp. XWY-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4280032..4290667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PRJ_RS19900 (PRJ_3954) murB 4281129..4282148 (-) 1020 WP_104962286.1 UDP-N-acetylmuramate dehydrogenase -
  PRJ_RS19905 (PRJ_3955) - 4282145..4282609 (-) 465 WP_064491353.1 low molecular weight protein-tyrosine-phosphatase -
  PRJ_RS19910 (PRJ_3956) kdsB 4282609..4283373 (-) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PRJ_RS19915 (PRJ_3957) - 4283370..4283555 (-) 186 WP_003247142.1 Trm112 family protein -
  PRJ_RS19920 (PRJ_3958) lpxK 4283600..4284601 (-) 1002 WP_104962287.1 tetraacyldisaccharide 4'-kinase -
  PRJ_RS19925 (PRJ_3959) - 4284601..4285035 (-) 435 WP_010952926.1 biopolymer transporter ExbD -
  PRJ_RS19930 (PRJ_3960) exbB 4285032..4285667 (-) 636 WP_026031862.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PRJ_RS19935 (PRJ_3961) comA 4285778..4287991 (-) 2214 WP_104962904.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PRJ_RS19940 - 4288134..4288646 (+) 513 Protein_3778 DUF2062 domain-containing protein -
  PRJ_RS19945 (PRJ_3963) - 4288650..4289429 (-) 780 WP_003247128.1 ABC transporter permease -
  PRJ_RS19950 (PRJ_3964) - 4289426..4290358 (-) 933 WP_010952922.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22889.20 Da        Isoelectric Point: 7.3616

>NTDB_id=268268 PRJ_RS19930 WP_026031862.1 4285032..4285667(-) (exbB) [Pseudomonas sp. XWY-1]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLASGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVIGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=268268 PRJ_RS19930 WP_026031862.1 4285032..4285667(-) (exbB) [Pseudomonas sp. XWY-1]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAACGCCTGTGGACCTTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTATGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCCGATTCGCCACTGGGTGAAATCCTCGCGGCGGGCCTGGCCAAT
TCGCGTCACGGTCGGGAGATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCATGAACTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCGCCTCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTGCTGGCCAGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCTGGCCTGATGGTCGGTATCCCGGCAGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAACTGGTGATCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGTGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82

Multiple sequence alignment