Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   C1N51_RS08945 Genome accession   NZ_CP026315
Coordinates   1863187..1863831 (-) Length   214 a.a.
NCBI ID   WP_103410487.1    Uniprot ID   -
Organism   Vibrio campbellii strain BoB-90     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1858187..1868831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N51_RS08935 (C1N51_08935) uvrA 1859189..1862011 (-) 2823 WP_103410486.1 excinuclease ABC subunit UvrA -
  C1N51_RS08940 (C1N51_08940) galU 1862150..1863022 (-) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  C1N51_RS08945 (C1N51_08945) qstR 1863187..1863831 (-) 645 WP_103410487.1 LuxR C-terminal-related transcriptional regulator Regulator
  C1N51_RS08950 (C1N51_08950) ssb 1864125..1864661 (+) 537 WP_005432828.1 single-stranded DNA-binding protein Machinery gene
  C1N51_RS08955 (C1N51_08955) - 1864836..1866161 (+) 1326 WP_103410488.1 tyrosine-type recombinase/integrase -
  C1N51_RS08960 (C1N51_08960) - 1866173..1867726 (+) 1554 WP_103410489.1 site-specific integrase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24707.65 Da        Isoelectric Point: 8.0591

>NTDB_id=268083 C1N51_RS08945 WP_103410487.1 1863187..1863831(-) (qstR) [Vibrio campbellii strain BoB-90]
MKKSAYARKLFLISMEEDAWKKVEALEKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKELVLSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGIFYEENSLEQIGEGLKEIINGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=268083 C1N51_RS08945 WP_103410487.1 1863187..1863831(-) (qstR) [Vibrio campbellii strain BoB-90]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTAATCAGCATGGAAGAGGATGCATGGAAAAAGGTCGAAGCTCTGGA
GAAGTATACAGATATCGACATCCCCGTCATTTCGACCCAAGCACTGATGGAAGCAAACCCGAAGCACCGCAATAAAATCT
TGCTTATCGACTTCAGTGAGCACAAAGAGTTAGTTCTATCGATAAAAAACCTTCCCCTGATTTGGAAGAATTTCGAAACA
GTCGTGTTCAACGTTCCTAAACGTTTGACGACAGATGAGCTGTTGGCGTTTGGTCAATTGAAAGGCATCTTCTATGAAGA
GAATTCTCTTGAGCAGATTGGCGAAGGGTTAAAGGAAATCATTAATGGTCAAAACTGGCTGCCTCGCAATGTCACCAGTC
AACTTCTCCATTATTATCGTAACGTCATTAGTACCCACACCGCTCCTGCCACCGTCGATTTGACCATTCGTGAACTGCAA
GTACTTCGCTGCCTGCAAGCTGGCGCATCAAACAATCAAATGGCCGAAGAGTTATTCGTGAGCGAATTCACTATCAAGTC
TCACCTGTATCAGATTTTTAAGAAGCTTTCGGTCAAAAACCGTGTACAAGCGATTGCTTGGGCTGACCAAAACCTGATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

99.065

100

0.991
  qstR Vibrio parahaemolyticus RIMD 2210633

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.336

100

0.523

Multiple sequence alignment