Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | C1N51_RS08655 | Genome accession | NZ_CP026315 |
| Coordinates | 1804296..1804889 (+) | Length | 197 a.a. |
| NCBI ID | WP_103410478.1 | Uniprot ID | - |
| Organism | Vibrio campbellii strain BoB-90 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1799296..1809889
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1N51_RS08640 (C1N51_08640) | - | 1799982..1802549 (-) | 2568 | WP_050919986.1 | penicillin-binding protein 1A | - |
| C1N51_RS08645 (C1N51_08645) | pilM | 1802728..1803744 (+) | 1017 | WP_103410477.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| C1N51_RS08650 (C1N51_08650) | pilN | 1803728..1804303 (+) | 576 | WP_005432710.1 | PilN domain-containing protein | Machinery gene |
| C1N51_RS08655 (C1N51_08655) | pilO | 1804296..1804889 (+) | 594 | WP_103410478.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| C1N51_RS08660 (C1N51_08660) | pilP | 1804879..1805394 (+) | 516 | WP_005432702.1 | pilus assembly protein PilP | Machinery gene |
| C1N51_RS08665 (C1N51_08665) | pilQ | 1805429..1807177 (+) | 1749 | WP_199770605.1 | type IV pilus secretin PilQ | Machinery gene |
| C1N51_RS08670 (C1N51_08670) | aroK | 1807366..1807884 (+) | 519 | WP_010443904.1 | shikimate kinase AroK | - |
| C1N51_RS08675 (C1N51_08675) | aroB | 1807916..1809016 (+) | 1101 | WP_045380637.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23003.44 Da Isoelectric Point: 4.6248
>NTDB_id=268080 C1N51_RS08655 WP_103410478.1 1804296..1804889(+) (pilO) [Vibrio campbellii strain BoB-90]
MVNWQDLEMDEIAEWPLVPQLVAILLMVVLIQGFGYWFYLKPEEARLNTLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGDKESEHFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFQDVTWQRVSQESETLHFRVRANTYQFKPEEKEDAK
MVNWQDLEMDEIAEWPLVPQLVAILLMVVLIQGFGYWFYLKPEEARLNTLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGDKESEHFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFQDVTWQRVSQESETLHFRVRANTYQFKPEEKEDAK
Nucleotide
Download Length: 594 bp
>NTDB_id=268080 C1N51_RS08655 WP_103410478.1 1804296..1804889(+) (pilO) [Vibrio campbellii strain BoB-90]
ATGGTTAATTGGCAAGACCTAGAAATGGATGAAATCGCTGAATGGCCACTGGTGCCTCAGTTGGTGGCGATTCTTCTTAT
GGTAGTGTTGATTCAAGGTTTTGGTTACTGGTTTTATTTGAAGCCAGAGGAAGCTCGCCTTAATACCTTGATCCAAGAAG
AGCAGACTTTAAAAGTCGCGCTGAGGATCAAAGCCAATAAAGTCGCTGCACTGCCGCAGCTTCAGTCACAACTTGATGAA
CTGACCACCCGCTATGAACTGCTTTTGCAACAACTGCCGGCACAGAAAGAATTGGCGACCATGCTAGCGTCGGTTAATGA
ACTCGGCATCGATAACAAGCTGACATTTACGCGTATTGATTGGGGAGATAAAGAGTCAGAGCACTTCCTTTACCGTTTGC
CGCTCAATATTGAGCTAACGGGTGACTTCCATGACATCGGTCGTTTTTCACAGGCCATCGCCACCTTACCACGCATCATC
ACATTTCAAGATGTAACTTGGCAGCGAGTCAGTCAAGAGAGTGAAACCTTGCACTTCCGTGTAAGAGCAAACACTTACCA
ATTCAAACCAGAGGAAAAAGAAGATGCGAAATAA
ATGGTTAATTGGCAAGACCTAGAAATGGATGAAATCGCTGAATGGCCACTGGTGCCTCAGTTGGTGGCGATTCTTCTTAT
GGTAGTGTTGATTCAAGGTTTTGGTTACTGGTTTTATTTGAAGCCAGAGGAAGCTCGCCTTAATACCTTGATCCAAGAAG
AGCAGACTTTAAAAGTCGCGCTGAGGATCAAAGCCAATAAAGTCGCTGCACTGCCGCAGCTTCAGTCACAACTTGATGAA
CTGACCACCCGCTATGAACTGCTTTTGCAACAACTGCCGGCACAGAAAGAATTGGCGACCATGCTAGCGTCGGTTAATGA
ACTCGGCATCGATAACAAGCTGACATTTACGCGTATTGATTGGGGAGATAAAGAGTCAGAGCACTTCCTTTACCGTTTGC
CGCTCAATATTGAGCTAACGGGTGACTTCCATGACATCGGTCGTTTTTCACAGGCCATCGCCACCTTACCACGCATCATC
ACATTTCAAGATGTAACTTGGCAGCGAGTCAGTCAAGAGAGTGAAACCTTGCACTTCCGTGTAAGAGCAAACACTTACCA
ATTCAAACCAGAGGAAAAAGAAGATGCGAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
99.474 |
96.447 |
0.959 |
| pilO | Vibrio cholerae strain A1552 |
72.251 |
96.954 |
0.701 |