Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   C1N51_RS08645 Genome accession   NZ_CP026315
Coordinates   1802728..1803744 (+) Length   338 a.a.
NCBI ID   WP_103410477.1    Uniprot ID   -
Organism   Vibrio campbellii strain BoB-90     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1797728..1808744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N51_RS08630 (C1N51_08630) - 1798093..1798821 (-) 729 WP_005432732.1 redoxin family protein -
  C1N51_RS08635 (C1N51_08635) oxyR 1798996..1799904 (+) 909 WP_005432705.1 DNA-binding transcriptional regulator OxyR -
  C1N51_RS08640 (C1N51_08640) - 1799982..1802549 (-) 2568 WP_050919986.1 penicillin-binding protein 1A -
  C1N51_RS08645 (C1N51_08645) pilM 1802728..1803744 (+) 1017 WP_103410477.1 type IV pilus biogenesis protein PilM Machinery gene
  C1N51_RS08650 (C1N51_08650) pilN 1803728..1804303 (+) 576 WP_005432710.1 PilN domain-containing protein Machinery gene
  C1N51_RS08655 (C1N51_08655) pilO 1804296..1804889 (+) 594 WP_103410478.1 type 4a pilus biogenesis protein PilO Machinery gene
  C1N51_RS08660 (C1N51_08660) pilP 1804879..1805394 (+) 516 WP_005432702.1 pilus assembly protein PilP Machinery gene
  C1N51_RS08665 (C1N51_08665) pilQ 1805429..1807177 (+) 1749 WP_199770605.1 type IV pilus secretin PilQ Machinery gene
  C1N51_RS08670 (C1N51_08670) aroK 1807366..1807884 (+) 519 WP_010443904.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37861.28 Da        Isoelectric Point: 6.1141

>NTDB_id=268078 C1N51_RS08645 WP_103410477.1 1802728..1803744(+) (pilM) [Vibrio campbellii strain BoB-90]
MDKLLVTGIDIGHNSLKAVVLKPNGNSYALLGYKEIILKEGIVAENNTINHQEIVKTLKEMKKELPFRARKVAISVPDNA
VISKKLQIEQNLEESEKEFAVVQAFSHQSPFPVEELSLDFIKVDTDEQMRGTDSYQVFATRKDVVETRVEALQKSGLKPV
LVDVHSQSLGHMWKLVAERFPEKDKYCLLDIGSLNSSFTMFTEQGELFHKEFPCGTRTTGSLFQQDPLADDAQVATEQFN
RQIVERVKRQMQLYTSINGSQDIKGVWLSGEGAATPMLAEELSSQLALECELLNPLGLFEMKVSKRKRRAADWQHFTAAA
GLAVRGIQWLGGDNAVSH

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=268078 C1N51_RS08645 WP_103410477.1 1802728..1803744(+) (pilM) [Vibrio campbellii strain BoB-90]
ATGGATAAGCTATTAGTTACGGGCATAGATATTGGCCATAACAGCCTCAAAGCCGTGGTACTTAAACCCAATGGCAACAG
TTACGCACTACTGGGTTACAAAGAAATAATACTTAAGGAAGGTATTGTCGCTGAAAATAACACCATAAATCATCAAGAAA
TTGTAAAGACCCTTAAAGAGATGAAAAAAGAGCTACCTTTTCGTGCTCGAAAGGTCGCAATTTCAGTTCCAGATAATGCT
GTGATCAGTAAAAAGCTGCAGATAGAGCAGAACTTAGAAGAGAGTGAAAAGGAGTTTGCTGTTGTGCAAGCCTTCTCACA
TCAGTCTCCATTCCCCGTGGAAGAGCTGAGTCTTGACTTCATCAAAGTTGATACGGATGAGCAGATGCGAGGCACTGACA
GTTATCAGGTCTTCGCGACTCGTAAAGACGTGGTAGAAACCCGAGTTGAGGCATTGCAGAAATCAGGCTTGAAACCAGTA
TTGGTGGACGTGCACTCACAAAGTCTTGGTCATATGTGGAAATTGGTTGCGGAACGTTTTCCTGAAAAGGACAAGTATTG
TTTACTGGACATTGGTTCTTTGAACAGTTCTTTCACTATGTTCACTGAACAAGGTGAATTGTTTCATAAAGAATTTCCCT
GCGGTACTCGCACTACGGGCAGTTTGTTTCAACAAGATCCATTAGCAGACGATGCACAAGTGGCAACGGAGCAATTTAAT
CGACAAATCGTTGAGCGTGTTAAACGTCAGATGCAGCTCTATACCTCAATTAATGGAAGCCAAGATATCAAAGGCGTTTG
GCTTTCGGGAGAGGGCGCTGCAACACCTATGTTGGCCGAGGAGCTGTCTAGCCAGTTGGCACTAGAGTGTGAACTGCTTA
ATCCACTTGGTTTGTTTGAAATGAAGGTGTCTAAACGCAAACGTCGTGCCGCGGATTGGCAACACTTCACTGCTGCAGCC
GGACTGGCTGTACGTGGTATTCAGTGGCTAGGAGGTGACAATGCTGTATCACATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

97.929

100

0.979
  pilM Vibrio cholerae strain A1552

49.123

100

0.497

Multiple sequence alignment