Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   C1N51_RS08425 Genome accession   NZ_CP026315
Coordinates   1758119..1758751 (-) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio campbellii strain BoB-90     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1753119..1763751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N51_RS08410 (C1N51_08410) astA 1754324..1755343 (+) 1020 WP_012126464.1 arginine N-succinyltransferase -
  C1N51_RS08415 (C1N51_08415) astD 1755372..1756829 (+) 1458 WP_103410470.1 succinylglutamate-semialdehyde dehydrogenase -
  C1N51_RS08420 (C1N51_08420) - 1757094..1757885 (+) 792 WP_038892627.1 DUF1338 domain-containing protein -
  C1N51_RS08425 (C1N51_08425) crp 1758119..1758751 (-) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  C1N51_RS08430 (C1N51_08430) - 1758991..1759860 (-) 870 WP_005432770.1 phosphoribulokinase -
  C1N51_RS08435 (C1N51_08435) - 1759985..1760197 (-) 213 WP_005432763.1 YheU family protein -
  C1N51_RS08440 (C1N51_08440) - 1760268..1761275 (-) 1008 WP_103410471.1 hydrolase -
  C1N51_RS08445 (C1N51_08445) - 1761376..1761855 (-) 480 WP_005432772.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=268077 C1N51_RS08425 WP_005381432.1 1758119..1758751(-) (crp) [Vibrio campbellii strain BoB-90]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=268077 C1N51_RS08425 WP_005381432.1 1758119..1758751(-) (crp) [Vibrio campbellii strain BoB-90]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAGGGCGACTTCATTGGTGAACTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTGGCTGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTTAACCCAGACATCCTAATGCGCCTTTCTGCGCAGATGGCTCGTCGTCTACAAGTTACTAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACTCTTCTGAACCTTGCTAAACAGCCAGATGCGATGACGCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCGCACGGTAAAACTATCGTTGTTTACGGGACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment