Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   C0971_RS16310 Genome accession   NZ_CP026143
Coordinates   3180173..3180856 (-) Length   227 a.a.
NCBI ID   WP_003346475.1    Uniprot ID   -
Organism   Bacillus methanolicus strain DFS2     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3175173..3185856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0971_RS16290 (C0971_16305) - 3175530..3176249 (-) 720 WP_248892337.1 ComF family protein -
  C0971_RS16295 (C0971_16310) - 3176246..3177742 (-) 1497 WP_283108086.1 DEAD/DEAH box helicase -
  C0971_RS16300 (C0971_16315) - 3177766..3178851 (-) 1086 WP_248892338.1 hypothetical protein -
  C0971_RS16305 (C0971_16320) - 3179024..3179863 (-) 840 WP_034669156.1 DegV family protein -
  C0971_RS18315 - 3179940..3180068 (-) 129 WP_283108088.1 hypothetical protein -
  C0971_RS16310 (C0971_16325) degU 3180173..3180856 (-) 684 WP_003346475.1 response regulator transcription factor Regulator
  C0971_RS16315 (C0971_16330) degS 3180896..3182035 (-) 1140 WP_248892339.1 sensor histidine kinase Regulator
  C0971_RS16320 (C0971_16335) - 3182426..3183058 (+) 633 WP_003346479.1 YigZ family protein -
  C0971_RS16325 (C0971_16340) - 3183163..3184191 (+) 1029 WP_248892340.1 LCP family protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25545.11 Da        Isoelectric Point: 5.9879

>NTDB_id=267537 C0971_RS16310 WP_003346475.1 3180173..3180856(-) (degU) [Bacillus methanolicus strain DFS2]
MTTKIVIIDDHQLFREGVKRILDFEKSFEVVAEGDDGKDAIHLVEQYHPDVVIMDINMPHTNGIEATQQLIEKYPESRVI
ILSIHDDENYVTHALKTGASGYLLKEMDADALVEAVKVVAEGGSYIHPKVTHNLVKEYRRLATETGNGESYPPNGEIRRP
LHLLTRRECEVLQLLADGKSNRGIGEALFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEVR

Nucleotide


Download         Length: 684 bp        

>NTDB_id=267537 C0971_RS16310 WP_003346475.1 3180173..3180856(-) (degU) [Bacillus methanolicus strain DFS2]
TTGACTACAAAAATTGTGATAATTGATGATCACCAACTTTTTAGAGAAGGGGTAAAAAGAATATTAGATTTTGAAAAATC
ATTTGAAGTTGTGGCCGAGGGAGATGATGGAAAAGACGCCATTCATCTCGTTGAACAATATCATCCGGATGTTGTCATCA
TGGATATTAATATGCCTCATACAAATGGGATCGAGGCAACACAACAATTAATTGAGAAATATCCGGAATCACGCGTTATA
ATCTTATCGATTCACGATGATGAAAACTATGTAACCCATGCATTGAAAACAGGTGCGAGCGGCTACCTGCTGAAGGAAAT
GGATGCAGATGCACTCGTTGAAGCCGTTAAGGTTGTAGCTGAAGGCGGATCTTATATCCATCCGAAAGTTACCCACAATT
TAGTAAAAGAATATCGCAGGCTGGCAACCGAAACCGGAAACGGGGAATCTTATCCGCCCAACGGTGAAATCCGCCGCCCG
CTTCATTTATTGACACGCCGCGAATGTGAAGTGCTTCAGCTTTTGGCAGACGGAAAAAGCAACCGCGGCATCGGAGAAGC
ACTGTTCATCAGTGAAAAAACCGTGAAAAACCATGTCAGCAATATCCTGCAAAAAATGAATGTAAATGACCGTACCCAAG
CCGTTGTAGTAGCGATCAAAAACGGCTGGGTTGAGGTACGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(163-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

83.26

100

0.833
  vraR Staphylococcus aureus N315

37.333

99.119

0.37

Multiple sequence alignment