Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1977   Type   Machinery gene
Locus tag   LPC_RS10580 Genome accession   NC_009494
Coordinates   2351105..2351911 (-) Length   268 a.a.
NCBI ID   WP_011946907.1    Uniprot ID   -
Organism   Legionella pneumophila str. Corby     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2346105..2356911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC_RS10555 (LPC_1474) - 2346544..2347194 (-) 651 WP_011215956.1 lysoplasmalogenase -
  LPC_RS10560 (LPC_1475) - 2347274..2347774 (-) 501 WP_011946903.1 hypothetical protein -
  LPC_RS10565 (LPC_1476) - 2348267..2349127 (+) 861 WP_011946904.1 polysaccharide deacetylase family protein -
  LPC_RS10570 (LPC_1477) - 2349245..2350441 (-) 1197 WP_011946905.1 murein transglycosylase A -
  LPC_RS10575 (LPC_1478) lpp1976 2350551..2351108 (-) 558 WP_011946906.1 hypothetical protein Machinery gene
  LPC_RS10580 (LPC_1479) lpp1977 2351105..2351911 (-) 807 WP_011946907.1 PilW family protein Machinery gene
  LPC_RS10585 (LPC_1480) lpp1978 2351850..2352164 (-) 315 WP_011946908.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LPC_RS10590 (LPC_1481) hisC 2352324..2353433 (+) 1110 WP_011946909.1 histidinol-phosphate transaminase -
  LPC_RS10595 (LPC_1482) - 2353470..2353811 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  LPC_RS10605 (LPC_1483) secF 2353989..2354906 (-) 918 WP_010947716.1 protein translocase subunit SecF -
  LPC_RS10610 (LPC_1484) secD 2354919..2356775 (-) 1857 WP_011214250.1 protein translocase subunit SecD -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31367.53 Da        Isoelectric Point: 9.4273

>NTDB_id=26740 LPC_RS10580 WP_011946907.1 2351105..2351911(-) (lpp1977) [Legionella pneumophila str. Corby]
MLRGLKKANQLFAPMIWVLIEMGRQTGFSLSEMLISLFLASIITIPLTQFYIRSKPQYLKAQERLEINFDLLWIGDLLSD
SIRKAGFTPCVSVEKLKTFDSRHAERKIINFQIENMPQVQLRINRMSDVYTEVANFMSPTQIVIEESVISNIKHPLIISD
CRQGEVHTVSKIDKLSNGYQITLKKPLQFRYDEIAYLGEWLEETWFTKQNEKGEKTLHYKLFQTEELSPFIHEFYVTRRL
IKQRPVLDFSIGSDKETLRKISVSVRNL

Nucleotide


Download         Length: 807 bp        

>NTDB_id=26740 LPC_RS10580 WP_011946907.1 2351105..2351911(-) (lpp1977) [Legionella pneumophila str. Corby]
ATGTTACGTGGTTTAAAAAAAGCCAATCAATTATTCGCTCCTATGATCTGGGTGCTAATTGAAATGGGAAGACAAACAGG
ATTTAGTTTATCTGAGATGCTAATTAGTCTTTTTCTGGCAAGTATTATAACGATACCCCTTACTCAGTTTTATATAAGAA
GCAAGCCTCAATATCTAAAGGCACAAGAACGGTTAGAAATTAATTTTGATTTGCTGTGGATTGGTGATTTACTAAGCGAC
AGTATTAGAAAGGCTGGATTTACTCCATGCGTAAGTGTCGAAAAATTAAAAACTTTTGATTCTCGACATGCAGAGAGGAA
AATAATTAATTTTCAAATTGAAAATATGCCACAAGTTCAACTGCGTATTAACAGAATGAGTGATGTTTATACCGAAGTGG
CGAATTTTATGAGCCCAACACAAATAGTGATTGAAGAGTCAGTAATATCAAATATAAAACACCCATTAATTATTTCTGAT
TGCCGGCAAGGAGAAGTACATACAGTTTCAAAAATAGACAAACTAAGCAATGGATATCAAATTACTTTAAAAAAACCACT
GCAGTTCCGGTACGACGAAATTGCTTACTTGGGAGAGTGGCTTGAAGAAACATGGTTTACTAAACAAAATGAAAAGGGTG
AAAAGACATTACATTACAAACTGTTTCAAACAGAAGAATTAAGTCCATTCATTCATGAATTTTATGTTACCAGACGTCTT
ATCAAACAGAGGCCAGTATTGGATTTTTCAATTGGTAGCGATAAGGAAACGCTACGTAAAATCAGTGTTTCGGTACGAAA
TTTATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(22-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1977 Legionella pneumophila str. Paris

97.388

100

0.974
  lpp1977 Legionella pneumophila strain ERS1305867

97.388

100

0.974