Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   LPC_RS10585 Genome accession   NC_009494
Coordinates   2351850..2352164 (-) Length   104 a.a.
NCBI ID   WP_011946908.1    Uniprot ID   -
Organism   Legionella pneumophila str. Corby     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2346850..2357164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC_RS10560 (LPC_1475) - 2347274..2347774 (-) 501 WP_011946903.1 hypothetical protein -
  LPC_RS10565 (LPC_1476) - 2348267..2349127 (+) 861 WP_011946904.1 polysaccharide deacetylase family protein -
  LPC_RS10570 (LPC_1477) - 2349245..2350441 (-) 1197 WP_011946905.1 murein transglycosylase A -
  LPC_RS10575 (LPC_1478) lpp1976 2350551..2351108 (-) 558 WP_011946906.1 hypothetical protein Machinery gene
  LPC_RS10580 (LPC_1479) lpp1977 2351105..2351911 (-) 807 WP_011946907.1 PilW family protein Machinery gene
  LPC_RS10585 (LPC_1480) lpp1978 2351850..2352164 (-) 315 WP_011946908.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LPC_RS10590 (LPC_1481) hisC 2352324..2353433 (+) 1110 WP_011946909.1 histidinol-phosphate transaminase -
  LPC_RS10595 (LPC_1482) - 2353470..2353811 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  LPC_RS10605 (LPC_1483) secF 2353989..2354906 (-) 918 WP_010947716.1 protein translocase subunit SecF -
  LPC_RS10610 (LPC_1484) secD 2354919..2356775 (-) 1857 WP_011214250.1 protein translocase subunit SecD -
  LPC_RS10615 (LPC_1485) yajC 2356797..2357132 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12203.26 Da        Isoelectric Point: 9.8344

>NTDB_id=26741 LPC_RS10585 WP_011946908.1 2351850..2352164(-) (lpp1978) [Legionella pneumophila str. Corby]
MSKHQGFTLMEVLVSLMLMTTVVLTLVEQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPANYHFDIRRSQK
KIILNVTWFKKSQSIIRSYDLGAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=26741 LPC_RS10585 WP_011946908.1 2351850..2352164(-) (lpp1978) [Legionella pneumophila str. Corby]
ATGAGCAAGCATCAGGGTTTCACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGACGTTAGT
GGAACAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATTTGGCGAATCCAAGGCTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTGCAAATTATCATTTTGATATCAGGCGATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAATCAATTATTCGCTCCTATGATCTGGGTGCTAATTGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

97.115

100

0.971
  lpp1978 Legionella pneumophila str. Paris

95.192

100

0.952

Multiple sequence alignment