Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LPC_RS09430 Genome accession   NC_009494
Coordinates   2093657..2094151 (-) Length   164 a.a.
NCBI ID   WP_010947530.1    Uniprot ID   Q5ZUJ4
Organism   Legionella pneumophila str. Corby     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2088657..2099151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC_RS09415 (LPC_1244) recX 2090636..2091088 (-) 453 WP_010947526.1 recombination regulator RecX -
  LPC_RS09420 (LPC_1245) recA 2091081..2092127 (-) 1047 WP_010947527.1 recombinase RecA Machinery gene
  LPC_RS09425 (LPC_1246) - 2092430..2093365 (-) 936 WP_010947529.1 lpg1803 family Dot/Icm T4SS effector -
  LPC_RS09430 (LPC_1247) cinA 2093657..2094151 (-) 495 WP_010947530.1 CinA family protein Machinery gene
  LPC_RS09435 (LPC_1248) - 2094228..2094422 (-) 195 WP_011946739.1 hypothetical protein -
  LPC_RS09440 (LPC_1249) mutS 2094770..2097310 (+) 2541 WP_014844166.1 DNA mismatch repair protein MutS -
  LPC_RS09445 (LPC_1250) - 2097323..2099011 (+) 1689 WP_010947532.1 autotransporter assembly complex protein TamA -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17510.09 Da        Isoelectric Point: 6.7364

>NTDB_id=26730 LPC_RS09430 WP_010947530.1 2093657..2094151(-) (cinA) [Legionella pneumophila str. Corby]
MGHFSILVEEIAAYLKKAKWQLVTAESCTGGLIAACLTEIPGSSNWFERGFVTYSNLAKEEMLAVAHELIQTHGAVSEEV
ALAMAVGALQHSMGNIAVSVTGIAGPEGGSIEKPVGTVCFAWAVHHQFQQTSRQQFTGSRQEIRLSACQYALNGVLSTLK
KVCG

Nucleotide


Download         Length: 495 bp        

>NTDB_id=26730 LPC_RS09430 WP_010947530.1 2093657..2094151(-) (cinA) [Legionella pneumophila str. Corby]
ATGGGTCATTTCTCAATACTGGTTGAAGAAATAGCTGCCTATTTAAAAAAAGCAAAATGGCAATTAGTGACTGCGGAATC
TTGTACAGGAGGTTTAATTGCTGCTTGCCTTACGGAAATACCTGGAAGCTCAAATTGGTTTGAGCGTGGTTTTGTTACTT
ATAGTAATTTAGCTAAAGAGGAAATGCTTGCTGTTGCTCACGAGCTAATACAAACTCATGGGGCAGTCAGTGAAGAAGTG
GCTTTGGCTATGGCTGTTGGTGCGTTACAACATAGTATGGGTAATATCGCTGTATCAGTTACTGGCATCGCAGGTCCAGA
AGGAGGCAGTATTGAAAAACCAGTAGGTACTGTATGCTTTGCCTGGGCAGTTCACCATCAATTTCAACAAACATCAAGAC
AACAATTCACTGGAAGTCGGCAAGAAATACGTTTGTCTGCCTGTCAATATGCTTTAAATGGAGTTCTTTCTACTCTTAAA
AAAGTCTGTGGCTAA

Domains

Predicted by InterProScan.

Competence-damaged protein (CinA)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZUJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae R36A

38.217

95.732

0.366
  cinA Streptococcus pneumoniae Rx1

38.217

95.732

0.366
  cinA Streptococcus pneumoniae R6

38.217

95.732

0.366
  cinA Streptococcus pneumoniae D39

38.217

95.732

0.366