Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LCU_RS09330 Genome accession   NZ_CP026116
Coordinates   1808619..1809176 (+) Length   185 a.a.
NCBI ID   WP_035185909.1    Uniprot ID   A0AAJ0LDD0
Organism   Latilactobacillus curvatus JCM 1096 = DSM 20019     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1803619..1814176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCU_RS09305 (LCU_09310) - 1803668..1804780 (+) 1113 WP_004265009.1 PIN/TRAM domain-containing protein -
  LCU_RS09310 (LCU_09315) cysS 1805322..1806728 (+) 1407 WP_056967009.1 cysteine--tRNA ligase -
  LCU_RS09315 (LCU_09320) - 1806725..1807132 (+) 408 WP_004265086.1 Mini-ribonuclease 3 -
  LCU_RS09320 (LCU_09325) rlmB 1807119..1808006 (+) 888 WP_080752752.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LCU_RS09325 (LCU_09330) - 1808010..1808543 (+) 534 WP_004265051.1 NYN domain-containing protein -
  LCU_RS09330 (LCU_09335) sigH 1808619..1809176 (+) 558 WP_035185909.1 sigma-70 family RNA polymerase sigma factor Regulator
  LCU_RS09335 (LCU_09340) - 1809455..1809772 (+) 318 WP_004265021.1 PTS sugar transporter subunit IIB -
  LCU_RS09340 (LCU_09345) - 1809879..1810238 (+) 360 WP_004265057.1 YccF domain-containing protein -
  LCU_RS09345 (LCU_09350) - 1810389..1812332 (-) 1944 WP_004265038.1 ABC-F family ATP-binding cassette domain-containing protein -
  LCU_RS09350 (LCU_09355) - 1812528..1813175 (+) 648 WP_004265080.1 redox-sensing transcriptional repressor Rex -
  LCU_RS09355 (LCU_09360) - 1813228..1813860 (-) 633 WP_004265005.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21709.91 Da        Isoelectric Point: 6.2310

>NTDB_id=267259 LCU_RS09330 WP_035185909.1 1808619..1809176(+) (sigH) [Latilactobacillus curvatus JCM 1096 = DSM 20019]
MELAKRDANLIQAVVENDSEALDVLFKAYLPMVYRTFTPYYIRLFDEDDWLQEARIVCYETCQCYDQNCGKSFGGFYKLR
FHHHVLNLIRKELAQKRRVDQQALLFDCCPECNALAEDTVAYYQSTVEMRAYLETLSALELVAFRVLTGQLAVEQACSQL
DCTFEQMKRAQSRCQTKLKRFYTKQ

Nucleotide


Download         Length: 558 bp        

>NTDB_id=267259 LCU_RS09330 WP_035185909.1 1808619..1809176(+) (sigH) [Latilactobacillus curvatus JCM 1096 = DSM 20019]
ATGGAATTAGCAAAACGTGATGCAAACTTAATTCAAGCGGTGGTTGAAAACGATTCTGAGGCGTTGGATGTTTTATTTAA
AGCCTACCTACCAATGGTTTATCGCACCTTTACTCCATATTATATTCGCTTATTTGATGAGGACGATTGGTTACAAGAAG
CGCGAATCGTCTGTTATGAGACTTGCCAGTGTTATGATCAAAATTGCGGCAAAAGTTTTGGTGGTTTTTATAAATTACGC
TTTCACCACCACGTATTAAACTTGATTCGCAAAGAACTTGCTCAGAAACGACGGGTCGATCAGCAAGCCCTGTTATTTGA
TTGTTGTCCGGAATGCAATGCGCTCGCTGAAGATACCGTGGCATACTATCAGTCAACGGTTGAAATGCGGGCGTACTTAG
AGACACTATCTGCTTTAGAGTTAGTGGCCTTTCGGGTTTTGACGGGGCAACTAGCAGTTGAGCAAGCGTGTAGCCAGCTA
GATTGCACGTTTGAACAGATGAAACGGGCACAATCGCGTTGCCAGACAAAATTAAAACGATTCTATACTAAACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

73.077

98.378

0.719

Multiple sequence alignment