Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LCU_RS09300 Genome accession   NZ_CP026116
Coordinates   1802273..1803637 (+) Length   454 a.a.
NCBI ID   WP_039098345.1    Uniprot ID   A0A1B2A4P4
Organism   Latilactobacillus curvatus JCM 1096 = DSM 20019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1797273..1808637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCU_RS09280 (LCU_09285) - 1797527..1798873 (-) 1347 WP_056967168.1 C1 family peptidase -
  LCU_RS09285 (LCU_09290) - 1799181..1800503 (-) 1323 WP_056966945.1 C1 family peptidase -
  LCU_RS09290 (LCU_09295) rpiA 1800791..1801474 (-) 684 WP_056966947.1 ribose-5-phosphate isomerase RpiA -
  LCU_RS09295 (LCU_09300) - 1801655..1802194 (+) 540 WP_004265089.1 dUTP diphosphatase -
  LCU_RS09300 (LCU_09305) radA 1802273..1803637 (+) 1365 WP_039098345.1 DNA repair protein RadA Machinery gene
  LCU_RS09305 (LCU_09310) - 1803668..1804780 (+) 1113 WP_004265009.1 PIN/TRAM domain-containing protein -
  LCU_RS09310 (LCU_09315) cysS 1805322..1806728 (+) 1407 WP_056967009.1 cysteine--tRNA ligase -
  LCU_RS09315 (LCU_09320) - 1806725..1807132 (+) 408 WP_004265086.1 Mini-ribonuclease 3 -
  LCU_RS09320 (LCU_09325) rlmB 1807119..1808006 (+) 888 WP_080752752.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LCU_RS09325 (LCU_09330) - 1808010..1808543 (+) 534 WP_004265051.1 NYN domain-containing protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49680.06 Da        Isoelectric Point: 7.0278

>NTDB_id=267258 LCU_RS09300 WP_039098345.1 1802273..1803637(+) (radA) [Latilactobacillus curvatus JCM 1096 = DSM 20019]
MAKIKTQFVCQNCGYSSPRFLGRCPNCGAWNQMVEEREQPAASAKSSFTISGRATEPEQISTVNIQKEPRIKTELNELNR
VLGGGVVPGSLILIGGDPGIGKSTLLLQVSGQLEKVGKILYVSGEESASQIKMRANRLDVNGDQLYLYPETDMGNIRHQI
ETMKPDFVVIDSIQTMSEPEVTSAVGSVSQVRQVTAELMRIAKTNQITIFVVGHVTKEGAIAGPKILEHMVDTVLYFEGD
THHTYRILRSVKNRFGSTNEIGIFEMREAGLKEVANPSEIFLEERLAGATGSAVVVSMEGTRPILVELQTLITPTLFGNA
KRTSSGLDHNRVSLIMAVLEKRASLMLSNQDAYLKATGGVKLDEPAIDLAMAVSIASSYRDKEIPPTDCFVGEIGLTGEI
RRVNRIEQRVSEAAKLGFKRIYVPKNNLQGWDAPTDIQVIGVTTIAETLKKVFN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=267258 LCU_RS09300 WP_039098345.1 1802273..1803637(+) (radA) [Latilactobacillus curvatus JCM 1096 = DSM 20019]
GTGGCTAAAATTAAGACTCAGTTTGTTTGCCAAAATTGTGGCTATAGTTCCCCGAGATTCTTAGGTCGGTGCCCGAATTG
TGGCGCTTGGAACCAAATGGTCGAAGAACGTGAACAACCTGCAGCTAGCGCGAAATCAAGTTTTACGATTTCAGGGCGGG
CAACTGAACCAGAACAAATCAGCACCGTTAATATTCAAAAGGAACCGCGTATTAAAACTGAATTAAACGAACTCAACCGC
GTGCTTGGCGGTGGAGTGGTACCGGGCTCATTGATTCTAATTGGTGGGGATCCTGGGATTGGAAAATCAACGTTACTCCT
ACAAGTTTCCGGACAACTTGAAAAGGTTGGTAAGATTCTTTATGTTTCTGGTGAAGAAAGTGCATCCCAGATTAAGATGC
GGGCTAACCGGCTTGATGTGAATGGCGATCAACTTTACTTATATCCTGAAACGGATATGGGCAATATTCGGCATCAGATT
GAAACAATGAAACCCGACTTTGTGGTGATTGATTCAATTCAAACGATGAGCGAACCAGAAGTGACTTCCGCAGTCGGTAG
TGTTTCACAAGTGCGTCAAGTCACCGCTGAATTGATGCGCATTGCGAAGACGAACCAGATTACGATTTTTGTGGTTGGGC
ATGTCACTAAAGAGGGCGCTATTGCCGGTCCTAAGATTTTGGAGCACATGGTAGATACTGTGTTGTACTTTGAAGGGGAT
ACGCATCATACTTACCGCATTCTTCGCTCGGTTAAGAACCGGTTTGGTTCAACCAATGAGATTGGGATTTTCGAAATGCG
TGAAGCCGGCTTAAAAGAAGTCGCGAACCCATCCGAGATTTTCCTAGAAGAACGTTTGGCAGGGGCGACAGGTTCAGCCG
TGGTTGTTTCGATGGAAGGCACGCGACCCATCTTGGTCGAGTTACAGACCCTAATTACCCCAACACTATTCGGGAATGCA
AAGCGCACGTCTTCAGGGTTAGATCATAATCGAGTCTCCTTGATTATGGCGGTGCTTGAAAAGCGTGCTAGTCTCATGTT
ATCGAACCAAGATGCGTATTTAAAAGCAACTGGCGGTGTTAAATTAGATGAACCTGCGATTGATTTGGCGATGGCTGTTT
CGATTGCATCAAGCTATCGGGATAAAGAAATTCCACCAACTGATTGTTTCGTCGGTGAAATCGGTCTGACTGGTGAAATT
CGCCGGGTCAACCGGATTGAACAACGCGTCAGTGAAGCTGCTAAATTAGGCTTTAAACGTATTTATGTACCAAAGAATAA
CTTACAAGGGTGGGACGCACCGACGGATATTCAAGTGATTGGTGTGACCACGATTGCAGAAACTTTAAAGAAAGTATTCA
ACTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

AAA domain (AAA_25)

(69-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B2A4P4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

69.316

99.78

0.692
  radA Streptococcus pneumoniae Rx1

69.316

99.78

0.692
  radA Streptococcus pneumoniae D39

69.316

99.78

0.692
  radA Streptococcus pneumoniae R6

69.316

99.78

0.692
  radA Streptococcus pneumoniae TIGR4

69.316

99.78

0.692
  radA Streptococcus mitis NCTC 12261

69.316

99.78

0.692
  radA Bacillus subtilis subsp. subtilis str. 168

65.342

99.78

0.652

Multiple sequence alignment