Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LCU_RS01865 Genome accession   NZ_CP026116
Coordinates   339797..340468 (+) Length   223 a.a.
NCBI ID   WP_056966017.1    Uniprot ID   A0AAJ0LFI7
Organism   Latilactobacillus curvatus JCM 1096 = DSM 20019     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334797..345468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCU_RS01835 (LCU_01840) - 335008..336195 (+) 1188 WP_004270744.1 putative peptidoglycan glycosyltransferase FtsW -
  LCU_RS01840 (LCU_01845) - 336208..337296 (+) 1089 WP_004270757.1 CAP-associated domain-containing protein -
  LCU_RS01845 (LCU_01850) - 337316..337606 (+) 291 WP_004270748.1 YlbG family protein -
  LCU_RS01850 (LCU_01855) rsmD 337612..338166 (+) 555 WP_004270750.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LCU_RS01855 (LCU_01860) coaD 338178..338672 (+) 495 WP_004270756.1 pantetheine-phosphate adenylyltransferase -
  LCU_RS01860 (LCU_01865) - 338674..339720 (+) 1047 WP_080563410.1 SepM family pheromone-processing serine protease -
  LCU_RS01865 (LCU_01870) comEA 339797..340468 (+) 672 WP_056966017.1 helix-hairpin-helix domain-containing protein Machinery gene
  LCU_RS01870 (LCU_01875) - 340527..341015 (+) 489 WP_111447701.1 ComE operon protein 2 -
  LCU_RS01875 (LCU_01880) comEC 341156..343270 (+) 2115 WP_235805391.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LCU_RS01880 (LCU_01885) holA 343271..344299 (+) 1029 WP_004270758.1 DNA polymerase III subunit delta -
  LCU_RS01885 (LCU_01890) rpsT 344354..344608 (-) 255 WP_004271117.1 30S ribosomal protein S20 -
  LCU_RS01890 (LCU_01895) rpsO 344885..345154 (+) 270 WP_004271112.1 30S ribosomal protein S15 -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24819.48 Da        Isoelectric Point: 9.9048

>NTDB_id=267235 LCU_RS01865 WP_056966017.1 339797..340468(+) (comEA) [Latilactobacillus curvatus JCM 1096 = DSM 20019]
MWRDYWQRYRRFWWVPCLVIILLGGGVFWQHSRQQRFLSTNQQLMAQSTKRKVKAKPVKQKKSVSKGGFVDIKGAVAHPG
IYPICVAKTRLFEVLKQAGDVTEAADTSQLNLAQTLSDQLIIYVPTKGEAVQAEELVKAADEPQAATDNQAGAGPISTDA
KINLNQADATQLQTLNGIGPKKAEQIIAYRDEQGQFKQIEDLQKVGGIGPKTFEQLRPQICVN

Nucleotide


Download         Length: 672 bp        

>NTDB_id=267235 LCU_RS01865 WP_056966017.1 339797..340468(+) (comEA) [Latilactobacillus curvatus JCM 1096 = DSM 20019]
ATGTGGCGCGACTATTGGCAACGGTATCGTCGATTCTGGTGGGTACCTTGTTTGGTGATAATTTTACTTGGTGGTGGTGT
GTTTTGGCAGCATAGTCGGCAACAACGTTTTCTATCAACCAATCAACAATTGATGGCGCAATCAACTAAGCGAAAAGTGA
AGGCAAAACCCGTCAAACAGAAGAAAAGCGTCTCAAAAGGTGGGTTTGTCGATATCAAAGGCGCTGTGGCACATCCAGGG
ATTTATCCGATTTGTGTTGCAAAGACGCGTTTATTTGAGGTGCTGAAACAAGCGGGGGATGTGACCGAAGCAGCGGATAC
GAGTCAGTTGAACTTAGCGCAAACATTGAGTGACCAACTTATTATCTATGTGCCAACTAAGGGAGAAGCGGTGCAAGCCG
AAGAATTAGTGAAAGCGGCAGACGAGCCACAGGCTGCGACTGACAATCAAGCGGGAGCCGGTCCGATATCAACTGATGCT
AAAATCAACCTAAACCAAGCGGATGCGACACAATTGCAAACGCTAAATGGCATCGGTCCTAAAAAAGCTGAACAAATAAT
TGCATATCGGGATGAGCAAGGGCAGTTTAAACAAATCGAAGATCTTCAAAAAGTTGGGGGAATTGGGCCGAAAACGTTTG
AACAATTACGGCCACAAATTTGTGTTAATTAG

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(70-115)

Helix-hairpin-helix motif (HHH_3)

(160-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Latilactobacillus sakei subsp. sakei 23K

64.103

100

0.673
  comEA Lactococcus lactis subsp. cremoris KW2

36.161

100

0.363

Multiple sequence alignment